Example of Journal of Computer-Aided Molecular Design format
Recent searches

Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format
Sample paper formatted on SciSpace - SciSpace
This content is only for preview purposes. The original open access content can be found here.
Look Inside
Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format Example of Journal of Computer-Aided Molecular Design format
Sample paper formatted on SciSpace - SciSpace
This content is only for preview purposes. The original open access content can be found here.
open access Open Access

Journal of Computer-Aided Molecular Design — Template for authors

Publisher: Springer
Categories Rank Trend in last 3 yrs
Computer Science Applications #165 of 693 down down by 76 ranks
Physical and Theoretical Chemistry #46 of 169 down down by 4 ranks
Drug Discovery #51 of 145 down down by 15 ranks
journal-quality-icon Journal quality:
High
calendar-icon Last 4 years overview: 343 Published Papers | 1804 Citations
indexed-in-icon Indexed in: Scopus
last-updated-icon Last updated: 09/07/2020
Related journals
Insights
General info
Top papers
Popular templates
Get started guide
Why choose from SciSpace
FAQ

Related Journals

open access Open Access
recommended Recommended

Springer

Quality:  
High
CiteRatio: 9.5
SJR: 1.35
SNIP: 1.744
open access Open Access
recommended Recommended

American Chemical Society

Quality:  
High
CiteRatio: 9.3
SJR: 2.001
SNIP: 1.548
open access Open Access

Springer

Quality:  
Good
CiteRatio: 3.5
SJR: 0.385
SNIP: 0.741
open access Open Access

IEEE

Quality:  
High
CiteRatio: 6.4
SJR: 0.786
SNIP: 2.027

Journal Performance & Insights

Impact Factor

CiteRatio

Determines the importance of a journal by taking a measure of frequency with which the average article in a journal has been cited in a particular year.

A measure of average citations received per peer-reviewed paper published in the journal.

2.546

22% from 2018

Impact factor for Journal of Computer-Aided Molecular Design from 2016 - 2019
Year Value
2019 2.546
2018 3.25
2017 2.356
2016 3.028
graph view Graph view
table view Table view

5.3

2% from 2019

CiteRatio for Journal of Computer-Aided Molecular Design from 2016 - 2020
Year Value
2020 5.3
2019 5.4
2018 4.6
2017 5.3
2016 5.6
graph view Graph view
table view Table view

insights Insights

  • Impact factor of this journal has decreased by 22% in last year.
  • This journal’s impact factor is in the top 10 percentile category.

insights Insights

  • CiteRatio of this journal has decreased by 2% in last years.
  • This journal’s CiteRatio is in the top 10 percentile category.

SCImago Journal Rank (SJR)

Source Normalized Impact per Paper (SNIP)

Measures weighted citations received by the journal. Citation weighting depends on the categories and prestige of the citing journal.

Measures actual citations received relative to citations expected for the journal's category.

0.749

5% from 2019

SJR for Journal of Computer-Aided Molecular Design from 2016 - 2020
Year Value
2020 0.749
2019 0.786
2018 0.792
2017 0.941
2016 1.163
graph view Graph view
table view Table view

0.911

4% from 2019

SNIP for Journal of Computer-Aided Molecular Design from 2016 - 2020
Year Value
2020 0.911
2019 0.953
2018 0.8
2017 0.836
2016 1.201
graph view Graph view
table view Table view

insights Insights

  • SJR of this journal has decreased by 5% in last years.
  • This journal’s SJR is in the top 10 percentile category.

insights Insights

  • SNIP of this journal has decreased by 4% in last years.
  • This journal’s SNIP is in the top 10 percentile category.

Journal of Computer-Aided Molecular Design

Guideline source: View

All company, product and service names used in this website are for identification purposes only. All product names, trademarks and registered trademarks are property of their respective owners.

Use of these names, trademarks and brands does not imply endorsement or affiliation. Disclaimer Notice

Springer

Journal of Computer-Aided Molecular Design

The Journal of Computer-Aided Molecular Design provides a form for disseminating information on both the theory and the application of computer-based methods in the analysis and design of molecules. The scope of the journal encompasses papers which report new and original rese...... Read More

Computer Science

i
Last updated on
09 Jul 2020
i
ISSN
0920-654X
i
Impact Factor
Medium - 0.941
i
Open Access
Yes
i
Sherpa RoMEO Archiving Policy
Green faq
i
Plagiarism Check
Available via Turnitin
i
Endnote Style
Download Available
i
Bibliography Name
SPBASIC
i
Citation Type
Author Year
(Blonder et al, 1982)
i
Bibliography Example
Beenakker CWJ (2006) Specular andreev reflection in graphene. Phys Rev Lett 97(6):067,007, URL 10.1103/PhysRevLett.97.067007

Top papers written in this journal

Journal Article DOI: 10.1007/S10822-013-9644-8
Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments
G. Madhavi Sastry1, Matvey Adzhigirey1, Tyler Day1, Ramakrishna Annabhimoju1, Woody Sherman1

Abstract:

Structure-based virtual screening plays an important role in drug discovery and complements other screening approaches. In general, protein crystal structures are prepared prior to docking in order to add hydrogen atoms, optimize hydrogen bonds, remove atomic clashes, and perform other operations that are not part of the x-ra... Structure-based virtual screening plays an important role in drug discovery and complements other screening approaches. In general, protein crystal structures are prepared prior to docking in order to add hydrogen atoms, optimize hydrogen bonds, remove atomic clashes, and perform other operations that are not part of the x-ray crystal structure refinement process. In addition, ligands must be prepared to create 3-dimensional geometries, assign proper bond orders, and generate accessible tautomer and ionization states prior to virtual screening. While the prerequisite for proper system preparation is generally accepted in the field, an extensive study of the preparation steps and their effect on virtual screening enrichments has not been performed. In this work, we systematically explore each of the steps involved in preparing a system for virtual screening. We first explore a large number of parameters using the Glide validation set of 36 crystal structures and 1,000 decoys. We then apply a subset of protocols to the DUD database. We show that database enrichment is improved with proper preparation and that neglecting certain steps of the preparation process produces a systematic degradation in enrichments, which can be large for some targets. We provide examples illustrating the structural changes introduced by the preparation that impact database enrichment. While the work presented here was performed with the Protein Preparation Wizard and Glide, the insights and guidance are expected to be generalizable to structure-based virtual screening with other docking methods. read more read less

Topics:

Virtual screening (58%)58% related to the paper
3,658 Citations
Journal Article DOI: 10.1023/A:1008193805436
Molden: a pre- and post-processing program for molecular and electronic structures.

Abstract:

Molden is a software package for pre- and postprocessing of computational chemistry program data. Interfacing to the ab initio programs Games-US/UK and Gaussian and to the semi-empirical package MOPAC is provided. The emphasis is on computation and visualization of electronic and molecular properties but, e.g., reaction pathw... Molden is a software package for pre- and postprocessing of computational chemistry program data. Interfacing to the ab initio programs Games-US/UK and Gaussian and to the semi-empirical package MOPAC is provided. The emphasis is on computation and visualization of electronic and molecular properties but, e.g., reaction pathways can be simulated as well. Some molecular properties of interest are processed directly from the output of the computational chemistry programs, others are calculated in MOLDEN before display. The package features different options to display MOLecular electronic DENsity, each focusing on a different structural aspect: molecular orbitals, electron density, molecular minus atomic density and the Laplacian of the electron density. To display difference density, either the spherically averaged atomic density or the oriented ground state atomic density can be used for a number of standard basis sets. The quantum mechanical electrostatic potential or a distributed multiple expansion derived electrostatic potential can be calculated and atomic charges can be fitted to these potentials calculated on Connolly surface(s). Reaction pathways and molecular vibrations can be visualized. Input structures can be generated with a Z-matrix editor. A variety of graphics languages is supported: XWindows, postscript, VRML and Povray format. read more read less

Topics:

Molecular Density (56%)56% related to the paper, Electronic density (55%)55% related to the paper, Molecular orbital (53%)53% related to the paper, Charge density (51%)51% related to the paper
2,932 Citations
Journal Article DOI: 10.1007/BF00128336
MOPAC: A semiempirical molecular orbital program
James J. P. Stewart1

Abstract:

Before we start, we need a working definition for MOPAC. The following description has been used many times to describe MOPAC: MOPAC is a general-purpose, semiempirical molecular orbital program for the study of chemical reactions involving molecules, ions, and linear polymers. It implements the semiempirical Hamiltonians MND... Before we start, we need a working definition for MOPAC. The following description has been used many times to describe MOPAC: MOPAC is a general-purpose, semiempirical molecular orbital program for the study of chemical reactions involving molecules, ions, and linear polymers. It implements the semiempirical Hamiltonians MNDO, AM 1, MINDO/3, and MNDOPM3, and combir_es the calculations of vibrational spectra, thermodynamic quantities, isotopic substitution effects, and force constants in a fully integrated program. Elements parameterized at the MNDO level include H, Li, Be, B, C, N, O, F, A1, Si, P, S, C1, Ge, Br, Sn, Hg, Pb, and I; at the PM3 level the elements H, C, N, O, F, A1, Si, P, S, C1, Br, and I are available. Within the electronic part of the calculation, molecular and localized orbitals, excited states up to sextets, chemical bond indices, charges, etc. are computed. Both intrinsic and dynamic reaction coordinates can be calculated. A transition-state location routine and two transition-state optimizing routines are available for studying chemical reactions. read more read less

Topics:

MOPAC (67%)67% related to the paper, Fragment molecular orbital (59%)59% related to the paper, Molecular orbital (52%)52% related to the paper
2,422 Citations
Journal Article DOI: 10.1023/A:1007996124545
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes

Abstract:

This paper describes the development of a simple empirical scoring function designed to estimate the free energy of binding for a protein-ligand complex when the 3D structure of the complex is known or can be approximated. The function uses simple contact terms to estimate lipophilic and metal-ligand binding contributions, a ... This paper describes the development of a simple empirical scoring function designed to estimate the free energy of binding for a protein-ligand complex when the 3D structure of the complex is known or can be approximated. The function uses simple contact terms to estimate lipophilic and metal-ligand binding contributions, a simple explicit form for hydrogen bonds and a term which penalises flexibility. The coefficients of each term are obtained using a regression based on 82 ligand-receptor complexes for which the binding affinity is known. The function reproduces the binding affinity of the complexes with a cross-validated error of 8.68 kJ/mol. Tests on internal consistency indicate that the coefficients obtained are stable to changes in the composition of the training set. The function is also tested on two test sets containing a further 20 and 10 complexes, respectively. The deficiencies of this type of function are discussed and it is compared to approaches by other workers. read more read less

Topics:

Scoring functions for docking (54%)54% related to the paper, Lead Finder (52%)52% related to the paper
1,642 Citations
Journal Article DOI: 10.1007/S10822-005-8694-Y
Virtual computational chemistry laboratory - design and description

Abstract:

Internet technology offers an excellent opportunity for the development of tools by the cooperative effort of various groups and institutions. We have developed a multi-platform software system, Virtual Computational Chemistry Laboratory, http://www.vcclab.org, allowing the computational chemist to perform a comprehensive ser... Internet technology offers an excellent opportunity for the development of tools by the cooperative effort of various groups and institutions. We have developed a multi-platform software system, Virtual Computational Chemistry Laboratory, http://www.vcclab.org, allowing the computational chemist to perform a comprehensive series of molecular indices/properties calculations and data analysis. The implemented software is based on a three-tier architecture that is one of the standard technologies to provide client-server services on the Internet. The developed software includes several popular programs, including the indices generation program, DRAGON, a 3D structure generator, CORINA, a program to predict lipophilicity and aqueous solubility of chemicals, ALOGPS and others. All these programs are running at the host institutes located in five countries over Europe. In this article we review the main features and statistics of the developed system that can be used as a prototype for academic and industry models. read more read less

Topics:

Software system (58%)58% related to the paper, The Internet (52%)52% related to the paper, Software (51%)51% related to the paper
1,377 Citations
Author Pic

SciSpace is a very innovative solution to the formatting problem and existing providers, such as Mendeley or Word did not really evolve in recent years.

- Andreas Frutiger, Researcher, ETH Zurich, Institute for Biomedical Engineering

Get MS-Word and LaTeX output to any Journal within seconds
1
Choose a template
Select a template from a library of 40,000+ templates
2
Import a MS-Word file or start fresh
It takes only few seconds to import
3
View and edit your final output
SciSpace will automatically format your output to meet journal guidelines
4
Submit directly or Download
Submit to journal directly or Download in PDF, MS Word or LaTeX

(Before submission check for plagiarism via Turnitin)

clock Less than 3 minutes

What to expect from SciSpace?

Speed and accuracy over MS Word

''

With SciSpace, you do not need a word template for Journal of Computer-Aided Molecular Design.

It automatically formats your research paper to Springer formatting guidelines and citation style.

You can download a submission ready research paper in pdf, LaTeX and docx formats.

Time comparison

Time taken to format a paper and Compliance with guidelines

Plagiarism Reports via Turnitin

SciSpace has partnered with Turnitin, the leading provider of Plagiarism Check software.

Using this service, researchers can compare submissions against more than 170 million scholarly articles, a database of 70+ billion current and archived web pages. How Turnitin Integration works?

Turnitin Stats
Publisher Logos

Freedom from formatting guidelines

One editor, 100K journal formats – world's largest collection of journal templates

With such a huge verified library, what you need is already there.

publisher-logos

Easy support from all your favorite tools

Journal of Computer-Aided Molecular Design format uses SPBASIC citation style.

Automatically format and order your citations and bibliography in a click.

SciSpace allows imports from all reference managers like Mendeley, Zotero, Endnote, Google Scholar etc.

Frequently asked questions

1. Can I write Journal of Computer-Aided Molecular Design in LaTeX?

Absolutely not! Our tool has been designed to help you focus on writing. You can write your entire paper as per the Journal of Computer-Aided Molecular Design guidelines and auto format it.

2. Do you follow the Journal of Computer-Aided Molecular Design guidelines?

Yes, the template is compliant with the Journal of Computer-Aided Molecular Design guidelines. Our experts at SciSpace ensure that. If there are any changes to the journal's guidelines, we'll change our algorithm accordingly.

3. Can I cite my article in multiple styles in Journal of Computer-Aided Molecular Design?

Of course! We support all the top citation styles, such as APA style, MLA style, Vancouver style, Harvard style, and Chicago style. For example, when you write your paper and hit autoformat, our system will automatically update your article as per the Journal of Computer-Aided Molecular Design citation style.

4. Can I use the Journal of Computer-Aided Molecular Design templates for free?

Sign up for our free trial, and you'll be able to use all our features for seven days. You'll see how helpful they are and how inexpensive they are compared to other options, Especially for Journal of Computer-Aided Molecular Design.

5. Can I use a manuscript in Journal of Computer-Aided Molecular Design that I have written in MS Word?

Yes. You can choose the right template, copy-paste the contents from the word document, and click on auto-format. Once you're done, you'll have a publish-ready paper Journal of Computer-Aided Molecular Design that you can download at the end.

6. How long does it usually take you to format my papers in Journal of Computer-Aided Molecular Design?

It only takes a matter of seconds to edit your manuscript. Besides that, our intuitive editor saves you from writing and formatting it in Journal of Computer-Aided Molecular Design.

7. Where can I find the template for the Journal of Computer-Aided Molecular Design?

It is possible to find the Word template for any journal on Google. However, why use a template when you can write your entire manuscript on SciSpace , auto format it as per Journal of Computer-Aided Molecular Design's guidelines and download the same in Word, PDF and LaTeX formats? Give us a try!.

8. Can I reformat my paper to fit the Journal of Computer-Aided Molecular Design's guidelines?

Of course! You can do this using our intuitive editor. It's very easy. If you need help, our support team is always ready to assist you.

9. Journal of Computer-Aided Molecular Design an online tool or is there a desktop version?

SciSpace's Journal of Computer-Aided Molecular Design is currently available as an online tool. We're developing a desktop version, too. You can request (or upvote) any features that you think would be helpful for you and other researchers in the "feature request" section of your account once you've signed up with us.

10. I cannot find my template in your gallery. Can you create it for me like Journal of Computer-Aided Molecular Design?

Sure. You can request any template and we'll have it setup within a few days. You can find the request box in Journal Gallery on the right side bar under the heading, "Couldn't find the format you were looking for like Journal of Computer-Aided Molecular Design?”

11. What is the output that I would get after using Journal of Computer-Aided Molecular Design?

After writing your paper autoformatting in Journal of Computer-Aided Molecular Design, you can download it in multiple formats, viz., PDF, Docx, and LaTeX.

12. Is Journal of Computer-Aided Molecular Design's impact factor high enough that I should try publishing my article there?

To be honest, the answer is no. The impact factor is one of the many elements that determine the quality of a journal. Few of these factors include review board, rejection rates, frequency of inclusion in indexes, and Eigenfactor. You need to assess all these factors before you make your final call.

13. What is Sherpa RoMEO Archiving Policy for Journal of Computer-Aided Molecular Design?

SHERPA/RoMEO Database

We extracted this data from Sherpa Romeo to help researchers understand the access level of this journal in accordance with the Sherpa Romeo Archiving Policy for Journal of Computer-Aided Molecular Design. The table below indicates the level of access a journal has as per Sherpa Romeo's archiving policy.

RoMEO Colour Archiving policy
Green Can archive pre-print and post-print or publisher's version/PDF
Blue Can archive post-print (ie final draft post-refereeing) or publisher's version/PDF
Yellow Can archive pre-print (ie pre-refereeing)
White Archiving not formally supported
FYI:
  1. Pre-prints as being the version of the paper before peer review and
  2. Post-prints as being the version of the paper after peer-review, with revisions having been made.

14. What are the most common citation types In Journal of Computer-Aided Molecular Design?

The 5 most common citation types in order of usage for Journal of Computer-Aided Molecular Design are:.

S. No. Citation Style Type
1. Author Year
2. Numbered
3. Numbered (Superscripted)
4. Author Year (Cited Pages)
5. Footnote

15. How do I submit my article to the Journal of Computer-Aided Molecular Design?

It is possible to find the Word template for any journal on Google. However, why use a template when you can write your entire manuscript on SciSpace , auto format it as per Journal of Computer-Aided Molecular Design's guidelines and download the same in Word, PDF and LaTeX formats? Give us a try!.

16. Can I download Journal of Computer-Aided Molecular Design in Endnote format?

Yes, SciSpace provides this functionality. After signing up, you would need to import your existing references from Word or Bib file to SciSpace. Then SciSpace would allow you to download your references in Journal of Computer-Aided Molecular Design Endnote style according to Elsevier guidelines.

Fast and reliable,
built for complaince.

Instant formatting to 100% publisher guidelines on - SciSpace.

Available only on desktops 🖥

No word template required

Typset automatically formats your research paper to Journal of Computer-Aided Molecular Design formatting guidelines and citation style.

Verifed journal formats

One editor, 100K journal formats.
With the largest collection of verified journal formats, what you need is already there.

Trusted by academicians

I spent hours with MS word for reformatting. It was frustrating - plain and simple. With SciSpace, I can draft my manuscripts and once it is finished I can just submit. In case, I have to submit to another journal it is really just a button click instead of an afternoon of reformatting.

Andreas Frutiger
Researcher & Ex MS Word user
Use this template