A
Agnès Bouchez
Researcher at University of Savoy
Publications - 127
Citations - 6305
Agnès Bouchez is an academic researcher from University of Savoy. The author has contributed to research in topics: Diatom & Benthic zone. The author has an hindex of 40, co-authored 122 publications receiving 4806 citations. Previous affiliations of Agnès Bouchez include Institut national de la recherche agronomique.
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phylosignal: an R package to measure, test, and explore the phylogenetic signal.
TL;DR: A new R package, phylosignal, is presented which provides a collection of tools to explore the phylogenetic signal for continuous biological traits and analyzes the phylogenetics signal in pollution sensitivity for 17 species of diatoms.
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The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
Jan Pawlowski,Mary Kelly-Quinn,Florian Altermatt,Laure Apothéloz-Perret-Gentil,Pedro Beja,Angela Boggero,Ángel Borja,Agnès Bouchez,Tristan Cordier,Isabelle Domaizon,Maria João Feio,Ana Filipa Filipe,Riccardo Fornaroli,Wolfram Graf,Jelger Herder,Berry van der Hoorn,J. Iwan Jones,Marketa Sagova-Mareckova,Christian Moritz,José Barquín,Jeremy J. Piggott,Maurizio Pinna,Frédéric Rimet,B. Rinkevich,Carla Sousa-Santos,Valeria Specchia,Rosa Trobajo,Valentin Vasselon,Simon Vitecek,Jonas Zimmerman,Alexander M. Weigand,Florian Leese,Maria Kahlert +32 more
TL;DR: The main advantages and pitfalls of metabarcoding approaches to assess parameters such as richness, abundance, taxonomic composition and species ecological values, to be used for calculation of biotic indices are discussed.
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Life-forms, cell-sizes and ecological guilds of diatoms in European rivers
TL;DR: The objective of this paper is to make available to the scientific community an important check-list of taxa frequently observed in European rivers with their memberships to metrics, and clearly appears that metrics memberships are determined by taxonomy.
Journal ArticleDOI
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work.
Hannah Weigand,Arne J. Beermann,Fedor Čiampor,Filipe O. Costa,Zoltán Csabai,Sofia Alexandra Ferreira Duarte,Matthias F. Geiger,Michał Grabowski,Frédéric Rimet,Björn Rulik,Malin Strand,Nikolaus U. Szucsich,Alexander M. Weigand,Endre Willassen,Sofia A. Wyler,Agnès Bouchez,Ángel Borja,Zuzana Čiamporová-Zaťovičová,Sonia Maria Soares Ferreira,Klaas-Douwe B. Dijkstra,Ursula Eisendle,Jörg Freyhof,Piotr Gadawski,Wolfram Graf,Arne Haegerbaeumer,Berry van der Hoorn,Bella Japoshvili,Lujza Keresztes,Emre Keskin,Florian Leese,Jan Macher,Tomasz Mamos,Guy Paz,Vladimir Pešić,Daniela Marić Pfannkuchen,Martin Pfannkuchen,Benjamin W. Price,B. Rinkevich,Marcos A. L. Teixeira,Gábor Várbíró,Torbjørn Ekrem +40 more
TL;DR: This work analysed gaps in the two most important reference databases, Barcode of Life Data Systems (BOLD) and NCBI GenBank, with a focus on the taxa most frequently used in WFD and MSFD, and found that coverage varies strongly among taxonomic groups, and among geographic regions.
Journal ArticleDOI
Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive.
Daniel Hering,Ángel Borja,J. Iwan Jones,Didier Pont,Pieter Boets,Agnès Bouchez,Kat Bruce,Stina Drakare,Bernd Hänfling,Maria Kahlert,Florian Leese,Kristian Meissner,Patricia Mergen,Patricia Mergen,Yorick Reyjol,Pedro Segurado,Alfried P. Vogler,Martyn Kelly +17 more
TL;DR: Overall, suitability of DNA-based identification is particularly high for fish, as eDNA is a well-suited sampling approach which can replace expensive and potentially harmful methods such as gill-netting, trawling or electrofishing.