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Ben J. Woodcroft
Researcher at University of Queensland
Publications - 60
Citations - 6916
Ben J. Woodcroft is an academic researcher from University of Queensland. The author has contributed to research in topics: Permafrost & Metagenomics. The author has an hindex of 27, co-authored 52 publications receiving 5219 citations. Previous affiliations of Ben J. Woodcroft include University of Melbourne & Queensland University of Technology.
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Journal ArticleDOI
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks,Christian Rinke,Maria Chuvochina,Pierre-Alain Chaumeil,Ben J. Woodcroft,Paul N. Evans,Philip Hugenholtz,Gene W. Tyson +7 more
TL;DR: The recovery of 7,903 bacterial and archaeal metagenome-assembled genomes increases the phylogenetic diversity represented by public genome repositories and provides the first representatives from 20 candidate phyla.
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The Amphimedon queenslandica genome and the evolution of animal complexity
Mansi Srivastava,Oleg Simakov,Oleg Simakov,Jarrod Chapman,Bryony Fahey,Marie Gauthier,Marie Gauthier,Therese Mitros,Gemma S. Richards,Gemma S. Richards,Cecilia Conaco,Michael Dacre,Uffe Hellsten,Claire Larroux,Claire Larroux,Nicholas H. Putnam,Mario Stanke,Maja Adamska,Maja Adamska,Aaron E. Darling,Sandie M. Degnan,Todd H. Oakley,David C. Plachetzki,Yufeng Zhai,Marcin Adamski,Marcin Adamski,Andrew D Calcino,Scott F. Cummins,David Goodstein,Christina Harris,Daniel J. Jackson,Daniel J. Jackson,Sally P. Leys,Shengqiang Q. Shu,Ben J. Woodcroft,Michel Vervoort,Kenneth S. Kosik,Gerard Manning,Bernard M. Degnan,Daniel S. Rokhsar,Daniel S. Rokhsar +40 more
TL;DR: In this paper, the authors present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization.
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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
Andrew Grimson,Mansi Srivastava,Bryony Fahey,Ben J. Woodcroft,H. Rosaria Chiang,Nicole King,Bernard M. Degnan,Daniel S. Rokhsar,Daniel S. Rokhsar,David P. Bartel +9 more
TL;DR: This work identifies small RNAs from animal phyla that diverged before the emergence of the Bilateria, a close relative of the cnidarian Nematostella vectensis (starlet sea anemone), which possesses an extensive repertoire of miRNA genes, two classes of piRNAs and a complement of proteins specific to small-RNA biology comparable to that of humans.
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Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota.
Inka Vanwonterghem,Paul N. Evans,Donovan H. Parks,Paul D. Jensen,Ben J. Woodcroft,Philip Hugenholtz,Gene W. Tyson +6 more
TL;DR: The discovery of divergent methyl-coenzyme M reductase genes in population genomes recovered from anoxic environments with high methane flux that belong to a new archaeal phylum, the Verstraetearchaeota, indicate that methanogen diversity is only beginning to understand and support an ancient origin for methane metabolism in the Archaea, which is changing the authors' understanding of the global carbon cycle.
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Methane dynamics regulated by microbial community response to permafrost thaw
C. K. McCalley,Ben J. Woodcroft,S. B. Hodgkins,Richard Wehr,Eun Hae Kim,Rhiannon Mondav,Patrick M. Crill,Jeffrey P. Chanton,Virginia I. Rich,Gene W. Tyson,Scott R. Saleska +10 more
TL;DR: It is shown that changes in vegetation and increasing methane emissions with permafrost thaw are associated with a switch from hydrogenotrophic to partly acetoclastic methanogenesis, resulting in a large shift in the δ13C signature (10–15‰) of emitted methane.