J
Jeremy R. Greenwood
Researcher at Schrödinger
Publications - 73
Citations - 11945
Jeremy R. Greenwood is an academic researcher from Schrödinger. The author has contributed to research in topics: Receptor & Agonist. The author has an hindex of 30, co-authored 70 publications receiving 9526 citations. Previous affiliations of Jeremy R. Greenwood include Novo Nordisk & Howard Hughes Medical Institute.
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Journal ArticleDOI
Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes
Richard A. Friesner,Robert B. Murphy,Matthew P. Repasky,Leah L. Frye,Jeremy R. Greenwood,Thomas A. Halgren,Paul C. Sanschagrin,Daniel T. Mainz +7 more
TL;DR: Enrichment results demonstrate the importance of the novel XP molecular recognition and water scoring in separating active and inactive ligands and avoiding false positives.
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Epik: a software program for pK a prediction and protonation state generation for drug-like molecules
John C. Shelley,Anuradha Cholleti,Leah L. Frye,Jeremy R. Greenwood,Mathew R. Timlin,Makoto Uchimaya +5 more
TL;DR: Extensions to the well-established Hammett and Taft approaches are used for pKa prediction, namely, mesomer standardization, charge cancellation, and charge spreading to make the predicted results reflect the nature of the molecule itself rather just for the particular Lewis structure used on input.
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Jaguar: A high-performance quantum chemistry software program with strengths in life and materials sciences
Art D. Bochevarov,Edward Harder,Thomas F. Hughes,Jeremy R. Greenwood,Dale A. Braden,Dean M. Philipp,David Rinaldo,Mathew D. Halls,Jing Zhang,Richard A. Friesner +9 more
TL;DR: Jaguar as mentioned in this paper is an ab initio quantum chemical program that specializes in fast electronic structure predictions for molecular systems of medium and large size, such as density functional theory (DFT) and local second-order Moller-Plesset perturbation theory.
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Accurate and Reliable Prediction of Relative Ligand Binding Potency in Prospective Drug Discovery by Way of a Modern Free-Energy Calculation Protocol and Force Field
Lingle Wang,Yujie Wu,Yuqing Deng,Byungchan Kim,Levi C. T. Pierce,Goran Krilov,Dmitry Lupyan,Shaughnessy Robinson,Markus K. Dahlgren,Jeremy R. Greenwood,Donna L. Romero,Craig E. Masse,Jennifer L. Knight,Thomas Steinbrecher,Thijs Beuming,Wolfgang Damm,Edward Harder,Woody Sherman,Mark L. Brewer,Ron Wester,Murcko Mark A,Leah L. Frye,Ramy Farid,Teng-Yi Lin,David L. Mobley,William L. Jorgensen,Bruce J. Berne,Richard A. Friesner,Robert Abel +28 more
TL;DR: An approach to designing tight-binding ligands with a substantial reduction in false positives relative to compounds synthesized on the basis of other computational or medicinal chemistry approaches is reported, demonstrating the robustness and broad range of applicability of this approach, which can be used to drive decisions in lead optimization.
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Towards the comprehensive, rapid, and accurate prediction of the favorable tautomeric states of drug-like molecules in aqueous solution
TL;DR: Recommendations are made for how to best incorporate tautomers in molecular design and virtual screening workflows by parameterizing new systems of interest using DFT and experimental data.