Oomycetes form a deep lineage of eukaryotic organisms that includes a large number of plant pathogens which threaten natural and managed ecosystems. We undertook a survey to query the community for their ranking of plant-pathogenic oomycete species based on scientific and economic importance. In total, we received 263 votes from 62 scientists in 15 countries for a total of 33 species. The Top 10 species and their ranking are: (1) Phytophthora infestans; (2, tied) Hyaloperonospora arabidopsidis; (2, tied) Phytophthora ramorum; (4) Phytophthora sojae; (5) Phytophthora capsici; (6) Plasmopara viticola; (7) Phytophthora cinnamomi; (8, tied) Phytophthora parasitica; (8, tied) Pythium ultimum; and (10) Albugo candida. This article provides an introduction to these 10 taxa and a snapshot of current research. We hope that the list will serve as a benchmark for future trends in oomycete research.

/pdf/the-top-10-oomycete-pathogens-in-molecular-plant-pathology-3gxpkolrjj.pdf

The Top 10 oomycete pathogens in molecular plant pathology

https://espace.library.uq.edu.au/view/UQ:705404/UQ705404_OA.pdf

Emerging microbial biocontrol strategies for plant pathogens.

Parasitic nematodes (roundworms) and platyhelminths (flatworms) cause debilitating chronic infections of humans and animals, decimate crop production and are a major impediment to socioeconomic development. Here we report the broadest comparative study to date of the genomes of parasitic and non-parasitic worms, involving 81. We have identified gene family births and hundreds of expanded gene families at key nodes in the phylogeny that are relevant to parasitism. Examples include gene families that modulate host immune responses, enable parasite migration though host tissues or allow the parasite to feed. We reveal extensive lineage-specific differences in core metabolism and protein families historically targeted for drug development. From an in silico screen, we have identified and prioritised new potential drug targets and compounds for testing. This comparative genomics resource provides a much needed boost for the research community to understand and combat parasitic worms.

/pdf/comparative-genomics-of-the-major-parasitic-worms-4kdqf5ty69.pdf

Comparative genomics of the major parasitic worms

Aim
To describe the patterns and trends in the spread of crop pests and pathogens around the world, and determine the socioeconomic, environmental and biological factors underlying the rate and degree of redistribution of crop-destroying organisms.

Location
Global.

Methods
Current country- and state-level distributions of 1901 pests and pathogens and historical observation dates for 424 species were compared with potential distributions based upon distributions of host crops. The degree of ‘saturation’, i.e. the fraction of the potential distribution occupied, was related to pest type, host range, crop production, climate and socioeconomic variables using linear models.

Results
More than one-tenth of all pests have reached more than half the countries that grow their hosts. If current trends continue, many important crop-producing countries will be fully saturated with pests by the middle of the century. While dispersal increases with host range overall, fungi have the narrowest host range but are the most widely dispersed group. The global dispersal of some pests has been rapid, but pest assemblages remain strongly regionalized and follow the distributions of their hosts. Pest assemblages are significantly correlated with socioeconomics, climate and latitude. Tropical staple crops, with restricted latitudinal ranges, tend to be more saturated with pests and pathogens than temperate staples with broad latitudinal ranges. We list the pests likely to be the most invasive in coming years.

Main conclusions
Despite ongoing dispersal of crop pests and pathogens, the degree of biotic homogenization of the globe remains moderate and regionally constrained, but is growing. Fungal pathogens lead the global invasion of agriculture, despite their more restricted host range. Climate change is likely to influence future distributions. Improved surveillance would reveal greater levels of invasion, particularly in developing countries.

https://onlinelibrary.wiley.com/doi/pdf/10.1111/geb.12214

The global spread of crop pests and pathogens

Due to the present scenario of climate change, plants have to evolve strategies to survive and perform under a plethora of biotic and abiotic stresses, which restrict plant productivity. Maintenance of plant protein functional conformation and preventing non-native proteins from aggregation, which leads to metabolic disruption, are of prime importance. Plant heat shock proteins (HSPs), as chaperones, play a pivotal role in conferring biotic and abiotic stress tolerance. Moreover, HSP also enhances membrane stability and detoxifies the reactive oxygen species (ROS) by positively regulating the antioxidant enzymes system. Additionally, it uses ROS as a signal to molecules to induce HSP production. HSP also enhances plant immunity by the accumulation and stability of pathogenesis-related (PR) proteins under various biotic stresses. Thus, to unravel the entire plant defense system, the role of HSPs are discussed with a special focus on plant response to biotic and abiotic stresses, which will be helpful in the development of stress tolerance in plant crops.

Heat Shock Proteins: Dynamic Biomolecules to Counter Plant Biotic and Abiotic Stresses.

The aim of this review was to undertake a survey of researchers working with plant-parasitic nematodes in order to determine a ‘top 10’ list of these pathogens based on scientific and economic importance. Any such list will not be definitive as economic importance will vary depending on the region of the world in which a researcher is based. However, care was taken to include researchers from as many parts of the world as possible when carrying out the survey. The top 10 list emerging from the survey is composed of: (1) root-knot nematodes (Meloidogyne spp.); (2) cyst nematodes (Heterodera and Globodera spp.); (3) root lesion nematodes (Pratylenchus spp.); (4) the burrowing nematode Radopholus similis; (5) Ditylenchus dipsaci; (6) the pine wilt nematode Bursaphelenchus xylophilus; (7) the reniform nematode Rotylenchulus reniformis; (8) Xiphinema index (the only virus vector nematode to make the list); (9) Nacobbus aberrans; and (10) Aphelenchoides besseyi. The biology of each nematode (or nematode group) is reviewed briefly.

/pdf/top-10-plant-parasitic-nematodes-in-molecular-plant-22vrx0hc6m.pdf

Michael G. K. Jones

Papers

Top 10 plant-parasitic nematodes in molecular plant pathology