N
Nataraj Sekhar Pagadala
Researcher at University of Alberta
Publications - 17
Citations - 1029
Nataraj Sekhar Pagadala is an academic researcher from University of Alberta. The author has contributed to research in topics: Docking (molecular) & Cancer. The author has an hindex of 6, co-authored 15 publications receiving 676 citations.
Papers
More filters
Journal ArticleDOI
Software for molecular docking: a review
TL;DR: Docking against homology-modeled targets also becomes possible for proteins whose structures are not known, and the druggability of the compounds and their specificity against a particular target can be calculated for further lead optimization processes.
Journal ArticleDOI
Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi
TL;DR: Functional analysis and gene expression profiling data suggest that members of the P450 families enriched in model basidiomycetes are catalytically versatile and possibly involved in fungal colonization of plant material.
Journal ArticleDOI
Molecular evolutionary dynamics of cytochrome P450 monooxygenases across kingdoms: Special focus on mycobacterial P450s
Mohammad Parvez,Lehlohonolo Benedict Qhanya,Ntsane Trevor Mthakathi,Ipeleng Kopano Rosinah Kgosiemang,Hans Denis Bamal,Nataraj Sekhar Pagadala,Ting Xie,Haoran Yang,Hengye Chen,Chrispian W. Theron,Richie Monyaki,Seiso Caiphus Raselemane,Vuyani Salewe,Bogadi Lorato Mongale,Retshedisitswe Godfrey Matowane,Sara Mohamed Hasaan Abdalla,Wool Isaac Booi,Mari van Wyk,Dedré Olivier,Charlotte E. Boucher,David R. Nelson,Jack A. Tuszynski,Jonathan M. Blackburn,Jae-Hyuk Yu,Samson Sitheni Mashele,Wanping Chen,Khajamohiddin Syed +26 more
TL;DR: Phylogenetic and functional analyses revealed the functional conservation of P450s despite belonging to different biological kingdoms, suggesting the adherence of P 450s to their innate function such as their involvement in either generation or oxidation of steroids and structurally related molecules, fatty acids and terpenoids.
Journal ArticleDOI
Genome-wide identification, annotation and characterization of novel thermostable cytochrome P450 monooxygenases from the thermophilic biomass-degrading fungi Thielavia terrestris and Myceliophthora thermophila
Khajamohiddin Syed,Karabo Shale,K. H. M. Nazmul Hussain Nazir,Nada Kraševec,Samson Sitheni Mashele,Nataraj Sekhar Pagadala +5 more
TL;DR: A large number of thermostable-P450s from two thermophilic biomass-degrading fungi, Myceliophthora thermophila and Thielavia terrestris, and Thermophilic ascomycetes P450s are of potential interest from a structural, mechanistic and biotechnological point of view.
Journal ArticleDOI
Molecular docking of thiamine reveals similarity in binding properties between the prion protein and other thiamine-binding proteins
Nataraj Sekhar Pagadala,Trent C. Bjorndahl,Nikolay Blinov,Nikolay Blinov,Andriy Kovalenko,Andriy Kovalenko,David S. Wishart,David S. Wishart +7 more
TL;DR: A docking study employed using structural X-ray solvent confirmed that water is involved in ligand stabilization and phosphate group interaction in thiamine–prion binding, and was consistent with the pharmacophore model ofThiamine-binding proteins.