N
Nikki Appleby
Researcher at Australian Centre for Plant Functional Genomics
Publications - 5
Citations - 501
Nikki Appleby is an academic researcher from Australian Centre for Plant Functional Genomics. The author has contributed to research in topics: Genetic marker & Expressed sequence tag. The author has an hindex of 5, co-authored 5 publications receiving 474 citations. Previous affiliations of Nikki Appleby include University of Queensland.
Papers
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Journal ArticleDOI
Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation
TL;DR: A review of automated methods for the discovery of Simple Sequence Repeats (SSRs) and Single Nucleotide Polymorphisms (SNPs) can be found in this paper.
Book ChapterDOI
New Technologies for Ultra-High Throughput Genotyping in Plants
TL;DR: In this paper, the authors describe automated methods for the discovery of molecular markers and new technologies for high-throughput, low-cost molecular marker genotyping, which can then be used in applications such as genetic linkage analysis and trait mapping, diversity analysis, association studies and marker-assisted selection.
Journal ArticleDOI
AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
Chris Duran,Nikki Appleby,Terry Clark,David L. A. Wood,Michael Imelfort,Jacqueline Batley,David Edwards +6 more
TL;DR: An integrated SNP discovery pipeline is developed, which identifies SNPs from assembled EST sequences with high resolution in a custom relational database along with EST source and annotation information.
Journal ArticleDOI
Single nucleotide polymorphism discovery in barley using autoSNPdb
TL;DR: In this paper, the autoSNP detection method was extended to produce auto-SNPdb, which integrates SNP and gene annotation information with a graphical viewer, and the resulting database is available over the Internet.
Journal ArticleDOI
Future tools for association mapping in crop plants.
Chris Duran,Chris Duran,Dominic EalesD. Eales,Dominic EalesD. Eales,Daniel MarshallD. Marshall,Daniel MarshallD. Marshall,Michael Imelfort,Michael Imelfort,Jiri Stiller,Jiri Stiller,Paul J. Berkman,Paul J. Berkman,Terry Clark,Terry Clark,Megan McKenzie,Megan McKenzie,Nikki Appleby,Nikki Appleby,Jacqueline Batley,Jacqueline Batley,Kaye BasfordK. Basford,Kaye BasfordK. Basford,David Edwards,David Edwards +23 more
TL;DR: Several tools are described that include autoSNPdb for SNP discovery from assembled sequence data; TAGdb for the identification of gene specific paired read Illumina GAII data; CMap3D for the comparison of mapped genetic and physical markers; and BAC and Gene Annotator for the online annotation of genes and genomic sequences.