Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The Theory of Island Biogeography

We consider 27 population and community terms used frequently by parasitologists when describing the ecology of parasites. We provide suggestions for various terms in an attempt to foster consistent use and to make terms used in parasite ecology easier to interpret for those who study free-living organisms. We suggest strongly that authors, whether they agree or disagree with us, provide complete and unambiguous definitions for all parameters of their studies.

/pdf/parasitology-meets-ecology-on-its-own-terms-margolis-et-al-4c6w2pahe6.pdf

Parasitology meets ecology on its own terms: Margolis et al. revisited.

The Cambridge Structural Database (CSD) contains a complete record of all published organic and metal–organic small-molecule crystal structures. The database has been in operation for over 50 years and continues to be the primary means of sharing structural chemistry data and knowledge across disciplines. As well as structures that are made public to support scientific articles, it includes many structures published directly as CSD Communications. All structures are processed both computationally and by expert structural chemistry editors prior to entering the database. A key component of this processing is the reliable association of the chemical identity of the structure studied with the experimental data. This important step helps ensure that data is widely discoverable and readily reusable. Content is further enriched through selective inclusion of additional experimental data. Entries are available to anyone through free CSD community web services. Linking services developed and maintained by the CCDC, combined with the use of standard identifiers, facilitate discovery from other resources. Data can also be accessed through CCDC and third party software applications and through an application programming interface.

https://journals.iucr.org/b/issues/2016/02/00/bm5086/bm5086.pdf

The Cambridge Structural Database

Statistics for Spatial Data.

This book is the second of two volumes in a series on terrestrial and marine comparisons, focusing on the temporal complement of the earlier spatial analysis of patchiness and pattern (Levin et al. 1993). The issue of the relationships among pattern, scale, and patchiness has been framed forcefully in John Steele’s writings of two decades (e.g., Steele 1978). There is no pattern without an observational frame. In the words of Nietzsche, “There are no facts… only interpretations.”

https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.2307/1941447

The Problem of Pattern and Scale in Ecology: The Robert H. MacArthur Award Lecture

The Ecology of Natural Disturbance and Patch Dynamics.

Introduction. Patch Dynamics in Nature. Adaptations of Plants and Animals in a Patch Dynamic Setting. Implications of Patch Dynamics for the Organization of Communities and the Functioning of Ecosystems. Synthesis.

The Ecology of Natural Disturbance and Patch Dynamics

Aim Our aim was to understand how similarity changes with distance in biological communities, to use the distance decay perspective as quantitative technique to describe biogeographic pattern, and to explore whether growth form, dispersal type, rarity, or support affected the rate of distance decay in similarity. Location North American spruce-fir forests, Appalachian montane spruce-fir forests. Methods We estimated rates of distance decay through regression of log-transformed compositional similarity against distance for pairwise comparisons of thirty-four white spruce plots and twenty-six black spruce plots distributed from eastern Canada to Alaska, six regional floras along the crest of the Appalachians, and six regional floras along the east‐west extent of the boreal forest. Results Similarity decreased significantly with distance, with the most linear models relating the log of similarity to untransformed distance. The rate of similarity decay was 1.5‐1.9 times higher for vascular plants than for bryophytes. The rate of distance decay was highest for berry-fruited and nut-bearing species (1.7 times higher than plumose-seeded species and 1.9 times higher than microseeded/spore species) and 2.1 times higher for herbs than woody plants. There was no distance decay for rare species, while species of intermediate frequency had 2.0 times higher distance decay rates than common species. The rate of distance decay was 2.7 times higher for floras from the fragmented Appalachians than for floras from the contiguous boreal forest. Main conclusions The distance decay of similarity can be caused by either a decrease in environmental similarity with distance (e.g. climatic gradients) or by limits to dispersal and niche width differences among taxa. Regardless of cause, the distance decay of similarity provides a simple descriptor of how biological diversity is distributed and therefore has consequences for conservation strategy.

http://labs.bio.unc.edu/Peet/ecoinfo/distance_decay/nekolapeter.pdf

The distance decay of similarity in biogeography and ecology

We report the crystal structure of the thiolate gold nanoparticle [TOA+][Au25(SCH2CH2Ph)18-], where TOA+ = N(C8H17)4+. The crystal structure reveals three types of gold atoms:  (a) one central gold atom whose coordination number is 12 (12 bonds to gold atoms); (b) 12 gold atoms that form the vertices of an icosahedron around the central atom, whose coordination number is 6 (five bonds to gold atoms and one to a sulfur atom), and (c) 12 gold atoms that are stellated on 12 of the 20 faces of the Au13 icosahedron. The arrangement of the latter gold atoms may be influenced by aurophilic bonding. Together they form six orthogonal semirings, or staples, of −Au2(SCH2CH2Ph)3− in an octahedral arrangement around the Au13 core.

Crystal structure of the gold nanoparticle [N(C8H17)4][Au25(SCH2CH2Ph)18].

NRCVAX is a complete system of programs, covering all aspects of crystal structure analysis from data reduction to the presentation of results. The system, which is written in a `neutral' Fortran 77, presently exists in two forms. The first runs on a VAX computer under VMS, on an 80386 PC under UNIX and under IBM VM/CMS and MVS/TSO. The second is an adaptation which runs on PC-XT, AT, PS/2 and comparable microcomputers under MS-DOS. The two versions differ somewhat in structure, but very little in code, operation or functionality except for the graphics. The many options of the programs can be selected in a highly interactive manner and because of this the system is very flexible. Most options are assigned default values, however, and it is usually safe to run the routines with a minimum of user input using the defaults. The system will accept data from a wide variety of sources and has interface routines for several other systems. Graphics in the VAX/UNIX version are based on the widely available Tektronix 4000 series protocol, while the microcomputer version supports most common display adapters. It is also possible to prepare files for a variety of plotters, dot-matrix printers and laser printers. Source code is distributed and it should not be difficult to adapt the system to any computer with virtual memory and a Fortran 77 compiler.

Peter S. White

Papers

The Ecology of Natural Disturbance and Patch Dynamics.

The Ecology of Natural Disturbance and Patch Dynamics

The distance decay of similarity in biogeography and ecology

Crystal structure of the gold nanoparticle [N(C8H17)4][Au25(SCH2CH2Ph)18].

NRCVAX ― an interactive-program system for structure analysis