Amorepacific

About: Amorepacific is a company organization based out in Seoul, South Korea. It is known for research contribution in the topics: Ginseng & Melanin. The organization has 1336 authors who have published 1032 publications receiving 17384 citations.

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

Abstract: In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. For example, a key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process versus those that measure flux through the autophagy pathway (i.e., the complete process including the amount and rate of cargo sequestered and degraded). In particular, a block in macroautophagy that results in autophagosome accumulation must be differentiated from stimuli that increase autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. It is worth emphasizing here that lysosomal digestion is a stage of autophagy and evaluating its competence is a crucial part of the evaluation of autophagic flux, or complete autophagy. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. Along these lines, because of the potential for pleiotropic effects due to blocking autophagy through genetic manipulation, it is imperative to target by gene knockout or RNA interference more than one autophagy-related protein. In addition, some individual Atg proteins, or groups of proteins, are involved in other cellular pathways implying that not all Atg proteins can be used as a specific marker for an autophagic process. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular assays, we hope to encourage technical innovation in the field.

A Highly Reactive and Enantioselective Bifunctional Organocatalyst for the Methanolytic Desymmetrization of Cyclic Anhydrides: Prevention of Catalyst Aggregation

Abstract: At present, there is much interest in organocatalysts, as they tend to be less toxic and more environmentally friendly than traditional metal-based catalysts. Although much progress has been made, the development of chiral organocatalysts that are as reactive and stereoselective as some of the best transition-metal catalysts remains a considerable challenge. To attain reasonable reaction rates and stereoselectivity with organocatalysts, a large catalyst loading is often required. One way to address this difficulty is to design bifunctional or multifunctional organocatalysts with functional groups that work cooperatively to stabilize the transition state and accelerate the rate of the reaction. It has been shown that ureaor thiourea-based bifunctional organocatalysts are effective in facilitating a variety of useful organic reactions, including the methanolytic desymmetrization of cyclic anhydrides. However, we showed recently that ureaand thiourea-based organocatalysts can form hydrogen-bonded aggregates, which results in a strong dependence of reactivity and enantioselectivity on concentration and temperature. X-ray crystal structures of monofunctional and bifunctional (thio)urea derivatives show that they form aggregates through hydrogen bonding between the (thio)urea NH groups and the (thio)urea sulfur or oxygen atom in an intermolecular fashion. A recent NMR spectroscopic study also showed that the thiourea IV exists as a dimer, even in solution. Furthermore, thiourea groups tend to degrade under thermal conditions. Herein we present a thermally robust sulfonamide-based bifunctional organocatalyst I (Scheme 1), which shows unprecedented catalytic activity and excellent enantioselectivity in the methanolytic desymmetrization of meso cyclic anhydrides. A detailed mechanistic and computational approach to the design of I resulted in a catalyst that does not self-aggregate to any appreciable extent. To the best of our knowledge, I is the first quinineand sulfonamide-based bifunctional organocatalyst. The quinuclidine group of I may be able to function as a general-base catalyst to activate the nucleophile, and the sulfonamide group may be able to activate the electrophile simultaneously by hydrogen bonding. To investigate the catalytic activity and enantioselectivity of the cinchona-alkaloid-based sulfonamide catalyst I, we examined the asymmetric methanolysis of cis-1,2-cyclohexanedicarboxylic anhydride (1a) in Et2O with various amounts of I at ambient temperature. The results are summarized in Table 1, together with the results obtained with other cinchona-alkaloid-based catalysts (quinine (II), (DHQ)2AQN (III), and the quinine-based thiourea catalyst IV; Scheme 1). The desymmetrization of 1a with I (10 mol%) proceeded surprisingly fast; the reaction was complete within 1 h to Scheme 1. Structures of cinchona-alkaloid-based organocatalysts.