Journal ArticleDOI
Map Manager QTX, cross-platform software for genetic mapping.
TLDR
Map Manager QTX is an enhanced version of Map Manager QT, rewritten with the aid of cross-platform libraries (XVT, Boulder Software Foundry, Inc.), which allow it to be compiled for multiple computer platforms.Abstract:
Map Manager QTX (QTX) is software for analysis of genetic mapping experiments in experimental plants and animals. It includes functions for mapping both Mendelian and quantitative trait loci. QTX is an enhanced version of Map Manager QT, rewritten with the aid of cross-platform libraries (XVT, Boulder Software Foundry, Inc.), which allow it to be compiled for multiple computer platforms. It currently is distributed for Microsoft Windows and Mac OS and is available at http://mapmgr.roswellpark.org/mmQTX.html.read more
Citations
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Journal ArticleDOI
R/qtl: QTL mapping in experimental crosses
TL;DR: R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental populations derived from inbred lines and includes functions for estimating genetic maps, identifying genotyping errors, and performing single-QTL and two-dimensional, two- QTL genome scans by multiple methods.
Journal ArticleDOI
An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts
Bertrand C. Y. Collard,Bertrand C. Y. Collard,M. Z. Z. Jahufer,J. B. Brouwer,Edwin C. K. Pang +4 more
TL;DR: This review provides an introduction to DNA markers and the concept of polymorphism, linkage analysis and map construction, the principles of QTL analysis and how markers may be applied in breeding programs using MAS.
Book
A Guide to QTL Mapping with R/qtl
Karl W. Broman,Saunak Sen +1 more
TL;DR: In this article, a single-QTL analysis was performed on two-dimensional, two-Q-TL scans and the model was extended to include multiple Q-TL models.
Journal ArticleDOI
Diversity Arrays Technology (DArT) for whole-genome profiling of barley
Peter Wenzl,Jason Carling,David Kudrna,Damian Jaccoud,Damian Jaccoud,Eric Huttner,Andris Kleinhofs,Andrezej Kilian +7 more
TL;DR: Diversity Arrays Technology can be effectively applied to genetic mapping and diversity analyses of barley and is highlighted as a generic technique for genome profiling in the context of molecular breeding and genomics.
Journal ArticleDOI
Circadian Mutant Overtime Reveals F-box Protein FBXL3 Regulation of Cryptochrome and Period Gene Expression
Sandra M. Siepka,Seung Hee Yoo,Junghea Park,Weimin Song,Vivek Kumar,Vivek Kumar,Yinin Hu,Choogon Lee,Joseph S. Takahashi,Joseph S. Takahashi +9 more
TL;DR: Fbxl3(Ovtm) defines a molecular link between CRY turnover and CLOCK/BMAL1-dependent circadian transcription to modulate circadian period.
References
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Journal ArticleDOI
The estimation of map distances from recombination values.
TL;DR: The genetic map is a tool to quantify the distance between genes on a chromosome, based on the observed frequency of crossovers during cell division, which is used to estimate the total distance between chromosomes.
Journal ArticleDOI
A simple regression method for mapping quantitative trait loci in line crosses using flanking markers.
Chris Haley,Sara Knott +1 more
TL;DR: Methods for mapping QTL based on multiple regression which can be applied using any general statistical package are developed and it is shown that these regression methods produce very similar results to those obtained using maximum likelihood.
Journal ArticleDOI
Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines.
Steve Tanksley,James C. Nelson +1 more
TL;DR: If successfully employed, advanced backcross QTL analysis can open the door to exploiting unadapted and exotic germplasm for the quantitative trait improvement of a number of crop plants.
Journal ArticleDOI
Advanced intercross lines, an experimental population for fine genetic mapping.
Ariel Darvasi,Morris Soller +1 more
TL;DR: Simulation results showed that to obtain the anticipated reduction in the confidence interval, breeding population size of the AIL in all generations should comprise an effective number of > or = 100 individuals, which is a useful resource for fine genetic mapping.
Journal ArticleDOI
RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar
TL;DR: This study illustrates the usefulness of RI lines for mapping a complex trait such as blast resistance and suggests that durable resistance in the traditional variety, Moroberekan, involves a complex of genes associated with both partial and complete resistance.