scispace - formally typeset
Journal ArticleDOI

Molden: a pre- and post-processing program for molecular and electronic structures.

Gijs Schaftenaar, +1 more
- 01 Feb 2000 - 
- Vol. 14, Iss: 2, pp 123-134
Reads0
Chats0
TLDR
Molden is a software package for pre- and postprocessing of computational chemistry program data that features different options to display MOLecular electronic DENsity, each focusing on a different structural aspect: molecular orbitals, electron density, molecular minus atomic density and the Laplacian of the electron density.
Abstract
Molden is a software package for pre- and postprocessing of computational chemistry program data. Interfacing to the ab initio programs Games-US/UK and Gaussian and to the semi-empirical package MOPAC is provided. The emphasis is on computation and visualization of electronic and molecular properties but, e.g., reaction pathways can be simulated as well. Some molecular properties of interest are processed directly from the output of the computational chemistry programs, others are calculated in MOLDEN before display. The package features different options to display MOLecular electronic DENsity, each focusing on a different structural aspect: molecular orbitals, electron density, molecular minus atomic density and the Laplacian of the electron density. To display difference density, either the spherically averaged atomic density or the oriented ground state atomic density can be used for a number of standard basis sets. The quantum mechanical electrostatic potential or a distributed multiple expansion derived electrostatic potential can be calculated and atomic charges can be fitted to these potentials calculated on Connolly surface(s). Reaction pathways and molecular vibrations can be visualized. Input structures can be generated with a Z-matrix editor. A variety of graphics languages is supported: XWindows, postscript, VRML and Povray format.

read more

Citations
More filters
Journal ArticleDOI

Avogadro: an advanced semantic chemical editor, visualization, and analysis platform

TL;DR: The work presented here details the Avogadro library, which is a framework providing a code library and application programming interface (API) with three-dimensional visualization capabilities; and has direct applications to research and education in the fields of chemistry, physics, materials science, and biology.
Journal ArticleDOI

Advances in molecular quantum chemistry contained in the Q-Chem 4 program package

Yihan Shao, +156 more
- 17 Jan 2015 - 
TL;DR: A summary of the technical advances that are incorporated in the fourth major release of the Q-Chem quantum chemistry program is provided in this paper, covering approximately the last seven years, including developments in density functional theory and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and open-shell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces.
Journal ArticleDOI

Gabedit—A graphical user interface for computational chemistry softwares

TL;DR: Gabedit is a freeware graphical user interface, offering preprocessing and postprocessing adapted (to date) to nine computational chemistry software packages, which includes tools for editing, displaying, analyzing, converting, and animating molecular systems.
Journal ArticleDOI

Molcas: a program package for computational chemistry.

TL;DR: MOLCAS as discussed by the authors is a package for calculations of electronic and structural properties of molecular systems in gas, liquid, or solid phase, which contains a number of modern quantum chemical methods for studies of the electronic structure in ground and excited electronic states.
References
More filters
Book

Atoms in molecules : a quantum theory

TL;DR: In this article, the quantum atom and the topology of the charge desnity of a quantum atom are discussed, as well as the mechanics of an atom in a molecule.
Journal ArticleDOI

The Protein Data Bank: a computer-based archival file for macromolecular structures.

TL;DR: The Protein Data Bank is a computer-based archival file for macromolecular structures that stores in a uniform format atomic co-ordinates and partial bond connectivities, as derived from crystallographic studies.
Journal ArticleDOI

A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model

TL;DR: In this paper, the authors present an approach to generate electrostatic potential (ESP) derived charges for molecules, which optimally reproduce the intermolecular interaction properties of molecules with a simple two-body additive potential, provided that a suitably accurate level of quantum mechanical calculation is used to derive the ESP around the molecule.
Journal ArticleDOI

Atomic charges derived from semiempirical methods

TL;DR: In this article, it is demonstrated that semi-empirical methods give electrostatic potential (ESP) derived atomic point charges that are in reasonable agreement with ab initio ESP charges.
Related Papers (5)