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Journal ArticleDOI

Pyrolobus fumarii, gen. and sp. nov., represents a novel group of archaea, extending the upper temperature limit for life to 113 degrees C

TLDR
A novel, irregular, coccoid-shaped archaeum was isolated from a hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge and described here a new genus, which is named Pyrolobus (the "fire lobe").
Abstract
A novel, irregular, coccoid-shaped archaeum was isolated from a hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters). It grew at between 90 degrees C and 113 degrees C (optimum 106 degrees C) and pH 4.0-6.5 (optimum 5.5) and 1%-4% salt (optimum 1.7%). The organism was a facultatively aerobic obligate chemolithoautotroph gaining energy by H2-oxidation. Nitrate, S2O3(2-), and low concentrations of O2 (up to 0.3% v/v) served as electron acceptors, yielding NH4+, H2S, and H2O as end products, respectively. Growth was inhibited by acetate, pyruvate, glucose, starch, or sulfur. The new isolate was able to form colonies on plates (at 102 degrees C) and to grow at a pressure of 25000 kPa (250 bar). Exponentially growing cultures survived a one-hour autoclaving at 121 degrees C. The GC content was 53 mol%. The core lipids consisted of glycerol-dialkyl glycerol tetraethers and traces of 2,3-di-O-phytanyl-sn-glycerol. The cell wall was composed of a surface layer of tetrameric protein complexes arranged on a p4-lattice (center-to-center distance 18.5 nm). By its 16S rRNA sequence, the new isolate belonged to the Pyrodictiaceae. Based on its GC-content, DNA homology, S-layer composition, and metabolism, we describe here a new genus, which we name Pyrolobus (the "fire lobe"). The type species is Pyrolobus fumarii (type strain 1A; DSM 11204).

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Citations
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Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability

TL;DR: This review concentrates on the remarkable thermostability of hyperthermophilic enzymes, and describes the biochemical and molecular properties of these enzymes, which are typically thermostable and optimally active at high temperatures.
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The microbial nitrogen-cycling network

TL;DR: This Review summarizes the current understanding of the microbial nitrogen-cycling network, including novel processes, their underlying biochemical pathways, the involved microorganisms, their environmental importance and industrial applications.
Journal ArticleDOI

Life in Extreme Environments

TL;DR: Critically what it means to be an extremophile is examined, and the implications for evolution, biotechnology and especially the search for life in the Universe are examined.
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Biological activity in the deep subsurface and the origin of heavy oil

TL;DR: Most of the world's oil was biodegraded under anaerobic conditions, with methane, a valuable commodity, often being a major by-product, which suggests alternative approaches to recovering the world' vast heavy oil resource that otherwise will remain largely unproduced.
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The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review

TL;DR: Progress made over the last decade in the analysis, occurrence and recognition of sources of GDGTs, their applications as biomarker lipids, and the development and application of proxies based on their distributions are reviewed.
References
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Journal ArticleDOI

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

TL;DR: It is proposed that a formal system of organisms be established in which above the level of kingdom there exists a new taxon called a "domain." Life on this planet would be seen as comprising three domains, the Bacteria, the Archaea, and the Eucarya, each containing two or more kingdoms.
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Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature.

TL;DR: The previously discovered linear relation between the base composition of DNA, expressed in percentage of guanine plus cytosine bases, and the denaturation temperature, T m, has been further investigated and it appears that the measurement of the T m is a satisfactory means of determining base composition in DNA.
Journal ArticleDOI

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

TL;DR: A phylogenetic analysis based upon ribosomal RNA sequence characterization reveals that living systems represent one of three aboriginal lines of descent: the eubacteria, comprising all typical bacteria, the archaebacteria, and the urkaryotes, now represented in the cytoplasmic component of eukaryotic cells.
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Methanogens: reevaluation of a unique biological group.

TL;DR: The present study focuses on the development and outline of a new treatment based on 16-year-old ribonucleic acid, as well as evidence in support of the new taxonomic treatment.
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