C
Carolyn Lu
Researcher at Massachusetts Institute of Technology
Publications - 3
Citations - 1511
Carolyn Lu is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: CTCF & Chromatin Loop. The author has an hindex of 3, co-authored 3 publications receiving 1130 citations.
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Journal ArticleDOI
Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg,Maxim Imakaev,Carolyn Lu,Anton Goloborodko,Nezar Abdennur,Leonid A. Mirny,Leonid A. Mirny +6 more
TL;DR: This model produces TADs and finer-scale features of Hi-C data because each TAD emerges from multiple loops dynamically formed through extrusion, contrary to typical illustrations of single static loops.
Posted ContentDOI
Formation of Chromosomal Domains in Interphase by Loop Extrusion
Geoffrey Fudenberg,Geoffrey Fudenberg,Maxim Imakaev,Carolyn Lu,Anton Goloborodko,Nezar Abdennur,Leonid A. Mirny,Leonid A. Mirny +7 more
TL;DR: In this article, the authors propose a loop extrusion model for topologically associating domains (TADs) formation, which shows that each TAD consists of multiple dynamically formed loops, rather than a single static loop.
Posted ContentDOI
Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg,Maxim Imakaev,Carolyn Lu,Anton Goloborodko,Nezar Abdennur,Leonid A. Mirny +5 more
TL;DR: Using polymer simulations, this model can produce TADs as determined by the analyses of Hi-C data and explains diverse experimental observations, including the preferential orientation of CTCF motifs, enrichments of architectural proteins at TAD boundaries, and boundary deletion experiments, and makes specific predictions for depletion of C TCF versus cohesin.