Computational single-cell RNA-seq (scRNA-seq) methods have been successfully applied to experiments representing a single condition, technology, or species to discover and define cellular phenotypes. However, identifying subpopulations of cells that are present across multiple data sets remains challenging. Here, we introduce an analytical strategy for integrating scRNA-seq data sets based on common sources of variation, enabling the identification of shared populations across data sets and downstream comparative analysis. We apply this approach, implemented in our R toolkit Seurat (http://satijalab.org/seurat/), to align scRNA-seq data sets of peripheral blood mononuclear cells under resting and stimulated conditions, hematopoietic progenitors sequenced using two profiling technologies, and pancreatic cell 'atlases' generated from human and mouse islets. In each case, we learn distinct or transitional cell states jointly across data sets, while boosting statistical power through integrated analysis. Our approach facilitates general comparisons of scRNA-seq data sets, potentially deepening our understanding of how distinct cell states respond to perturbation, disease, and evolution.

/pdf/integrating-single-cell-transcriptomic-data-across-different-3dtsi5w7ob.pdf

Integrating single-cell transcriptomic data across different conditions, technologies, and species.

“Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks”の学習報告

http://www.cs.unibo.it/~montesi/CBD/Articoli/SurvyBigData2.pdf

Data-intensive applications, challenges, techniques and technologies: A survey on Big Data

Accurate and timely traffic flow information is important for the successful deployment of intelligent transportation systems. Over the last few years, traffic data have been exploding, and we have truly entered the era of big data for transportation. Existing traffic flow prediction methods mainly use shallow traffic prediction models and are still unsatisfying for many real-world applications. This situation inspires us to rethink the traffic flow prediction problem based on deep architecture models with big traffic data. In this paper, a novel deep-learning-based traffic flow prediction method is proposed, which considers the spatial and temporal correlations inherently. A stacked autoencoder model is used to learn generic traffic flow features, and it is trained in a greedy layerwise fashion. To the best of our knowledge, this is the first time that a deep architecture model is applied using autoencoders as building blocks to represent traffic flow features for prediction. Moreover, experiments demonstrate that the proposed method for traffic flow prediction has superior performance.

Traffic Flow Prediction With Big Data: A Deep Learning Approach

This paper describes a single-image super-resolution (SR) algorithm based on nonnegative neighbor embedding. It belongs to the family of single-image example-based SR algorithms, since it uses a dictionary of low resolution (LR) and high resolution (HR) trained patch pairs to infer the unknown HR details. Each LR feature vector in the input image is expressed as the weighted combination of its K nearest neighbors in the dictionary; the corresponding HR feature vector is reconstructed under the assumption that the local LR embedding is preserved. Three key aspects are introduced in order to build a low-complexity competitive algorithm: (i) a compact but efficient representation of the patches (feature representation) (ii) an accurate estimation of the patches by their nearest neighbors (weight computation) (iii) a compact and already built (therefore external) dictionary, which allows a one-step upscaling. The neighbor embedding SR algorithm so designed is shown to give good visual results, comparable to other state-of-the-art methods, while presenting an appreciable reduction of the computational time.

http://people.rennes.inria.fr/Aline.Roumy/publi/12bmvc_Bevilacqua_lowComplexitySR.pdf

Low-complexity single-image super-resolution based on nonnegative neighbor embedding

For the last two decades, intelligent transportation systems (ITS) have emerged as an efficient way of improving the performance of transportation systems, enhancing travel security, and providing more choices to travelers. A significant change in ITS in recent years is that much more data are collected from a variety of sources and can be processed into various forms for different stakeholders. The availability of a large amount of data can potentially lead to a revolution in ITS development, changing an ITS from a conventional technology-driven system into a more powerful multifunctional data-driven intelligent transportation system (D2ITS) : a system that is vision, multisource, and learning algorithm driven to optimize its performance. Furthermore, D2ITS is trending to become a privacy-aware people-centric more intelligent system. In this paper, we provide a survey on the development of D2ITS, discussing the functionality of its key components and some deployment issues associated with D2ITS Future research directions for the development of D2ITS is also presented.

Data-Driven Intelligent Transportation Systems: A Survey

Hallucinating face by position-patch

In this work, we present an interactive system for visual analysis of urban traffic congestion based on GPS trajectories. For these trajectories we develop strategies to extract and derive traffic jam information. After cleaning the trajectories, they are matched to a road network. Subsequently, traffic speed on each road segment is computed and traffic jam events are automatically detected. Spatially and temporally related events are concatenated in, so-called, traffic jam propagation graphs. These graphs form a high-level description of a traffic jam and its propagation in time and space. Our system provides multiple views for visually exploring and analyzing the traffic condition of a large city as a whole, on the level of propagation graphs, and on road segment level. Case studies with 24 days of taxi GPS trajectories collected in Beijing demonstrate the effectiveness of our system.

/pdf/visual-traffic-jam-analysis-based-on-trajectory-data-57g67pjy84.pdf

Visual Traffic Jam Analysis Based on Trajectory Data

Gait Energy Image (GEI) is an efficient template for human identification by gait. However, such a template loses temporal information in a gait sequence, which is critical to the performance of gait recognition. To address this issue, we develop a novel temporal template, named Chrono-Gait Image (CGI), in this paper. The proposed CGI template first extracts the contour in each gait frame, followed by encoding each of the gait contour images in the same gait sequence with a multichannel mapping function and compositing them to a single CGI. To make the templates robust to a complex surrounding environment, we also propose CGI-based real and synthetic temporal information preserving templates by using different gait periods and contour distortion techniques. Extensive experiments on three benchmark gait databases indicate that, compared with the recently published gait recognition approaches, our CGI-based temporal information preserving approach achieves competitive performance in gait recognition with robustness and efficiency.

https://www.cs.cornell.edu/%7Echenwang/Papers/TPAMI_CGI.pdf

Human Identification Using Temporal Information Preserving Gait Template

As a unique biometric feature that can be recognized at a distance, gait has broad applications in crime prevention, forensic identification and social security. To portray a gait, existing gait recognition methods utilize either a gait template, where temporal information is hard to preserve, or a gait sequence, which must keep unnecessary sequential constraints and thus loses the flexibility of gait recognition. In this paper we present a novel perspective, where a gait is regarded as a set consisting of independent frames. We propose a new network named GaitSet to learn identity information from the set. Based on the set perspective, our method is immune to permutation of frames, and can naturally integrate frames from different videos which have been filmed under different scenarios, such as diverse viewing angles, different clothes/carrying conditions. Experiments show that under normal walking conditions, our single-model method achieves an average rank-1 accuracy of 95.0% on the CASIA-B gait dataset and an 87.1% accuracy on the OU-MVLP gait dataset. These results represent new state-of-the-art recognition accuracy. On various complex scenarios, our model exhibits a significant level of robustness. It achieves accuracies of 87.2% and 70.4% on CASIA-B under bag-carrying and coat-wearing walking conditions, respectively. These outperform the existing best methods by a large margin. The method presented can also achieve a satisfactory accuracy with a small number of frames in a test sample, e.g., 82.5% on CASIA-B with only 7 frames. The source code has been released at https://github.com/AbnerHqC/GaitSet.

/pdf/gaitset-regarding-gait-as-a-set-for-cross-view-gait-3rlce5v1c8.pdf

Junping Zhang

Papers

Data-Driven Intelligent Transportation Systems: A Survey

Hallucinating face by position-patch

Visual Traffic Jam Analysis Based on Trajectory Data

Human Identification Using Temporal Information Preserving Gait Template

GaitSet: Regarding Gait as a Set for Cross-View Gait Recognition