M
Mingyang Lu
Researcher at Rice University
Publications - 71
Citations - 5310
Mingyang Lu is an academic researcher from Rice University. The author has contributed to research in topics: Gene regulatory network & Population. The author has an hindex of 30, co-authored 63 publications receiving 4513 citations. Previous affiliations of Mingyang Lu include Northeastern University & Baylor College of Medicine.
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Journal ArticleDOI
The genome of the social amoeba Dictyostelium discoideum
Ludwig Eichinger,Justin A. Pachebat,Justin A. Pachebat,Gernot Glöckner,Marie-Adèle Rajandream,Richard Sucgang,Matthew Berriman,J. Song,Rolf Olsen,Karol Szafranski,Qikai Xu,Budi Tunggal,Sarah K. Kummerfeld,Martin Madera,Bernard Anri Konfortov,Francisco Rivero,Alan T. Bankier,Rüdiger Lehmann,N. Hamlin,Robert L. Davies,Pascale Gaudet,Petra Fey,Karen E Pilcher,Guokai Chen,David L. Saunders,Erica Sodergren,P. Davis,Arnaud Kerhornou,X. Nie,Neil Hall,Christophe Anjard,Lisa Hemphill,Nathalie Bason,Patrick Farbrother,Brian A. Desany,Eric M. Just,Takahiro Morio,René Rost,Carol Churcher,J. Cooper,Stephen F. Haydock,N. van Driessche,Ann Cronin,Ian Goodhead,Donna M. Muzny,T. Mourier,Arnab Pain,Mingyang Lu,D. Harper,R. Lindsay,Heidi Hauser,Kylie R. James,M. Quiles,M. Madan Babu,Tsuneyuki Saito,Carmen Buchrieser,A. Wardroper,A. Wardroper,Marius Felder,M. Thangavelu,D. Johnson,Andrew J Knights,H. Loulseged,Karen Mungall,Karen Oliver,Claire Price,Michael A. Quail,Hideko Urushihara,Judith Hernandez,Ester Rabbinowitsch,David Steffen,Mandy Sanders,Jun Ma,Yuji Kohara,Sarah Sharp,Mark Simmonds,S. Spiegler,Adrian Tivey,Sumio Sugano,Brian White,Danielle Walker,John Woodward,Thomas Winckler,Yoshiaki Tanaka,Gad Shaulsky,Michael Schleicher,George M. Weinstock,André Rosenthal,Edward C. Cox,Rex L. Chisholm,Richard A. Gibbs,William F. Loomis,Matthias Platzer,Robert R. Kay,Jeffrey G. Williams,Paul H. Dear,Angelika A. Noegel,Bart Barrell,Adam Kuspa +98 more
TL;DR: A proteome-based phylogeny shows that the amoebozoa diverged from the animal–fungal lineage after the plant–animal split, but Dictyostelium seems to have retained more of the diversity of the ancestral genome than have plants, animals or fungi.
Journal ArticleDOI
Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis
Mohit Kumar Jolly,Marcelo Boareto,Marcelo Boareto,Bin Huang,Dongya Jia,Mingyang Lu,Eshel Ben-Jacob,Eshel Ben-Jacob,José N. Onuchic,Herbert Levine +9 more
TL;DR: The operating principles of the core regulatory network for EMT/MET that acts as a “three-way” switch giving rise to three distinct phenotypes – E, M and hybrid E/M are reviewed and a theoretical framework that can elucidate the role of many other players in regulating epithelial plasticity is presented.
Journal ArticleDOI
MicroRNA-based regulation of epithelial-hybrid-mesenchymal fate determination.
Mingyang Lu,Mohit Kumar Jolly,Herbert Levine,José N. Onuchic,Eshel Ben-Jacob,Eshel Ben-Jacob +5 more
TL;DR: A unique model of the microRNA (miR)-based coupled chimeric modules underlying this core circuit is devised, showing that the miR-200/ZEB module functions as a ternary switch, allowing not only for the epithelial and mesenchymal phenotypes but also for a hybrid phenotype with mixed characteristics of collective cell migration, as seen in branching morphogenesis and wound closure.
Posted Content
Implications of the hybrid epithelial/mesenchymal phenotype in metastasis
Mohit Kumar Jolly,Marcelo Boareto,Bin Huang,Dongya Jia,Mingyang Lu,José N. Onuchic,Herbert Levine,Eshel Ben-Jacob +7 more
TL;DR: In this article, the operating principles of the core regulatory network for EMT/MET are reviewed, which acts as a three-way switch giving rise to three distinct phenotypes - epithelial, mesenchymal and hybrid epithelial/mesenchymals.
Journal ArticleDOI
Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways.
Dongya Jia,Mingyang Lu,Kwang Hwa Jung,Jun Hyoung Park,Linglin Yu,José N. Onuchic,Benny Abraham Kaipparettu,Herbert Levine +7 more
TL;DR: The experimental results confirm that TNBC cells can maintain a hybrid metabolic phenotype and targeting both glycolysis and OXPHOS is necessary to eliminate their metabolic plasticity, and the theoretical framework to decode the coupling of gene regulation and metabolic pathways is established.