It is clear that the above can lead to confusion when scientists of different countries are trying to communicate with each other. Another example is the burrowing rodent called a gopher found throughout the western United States. In the southeastern United States the term gopher refers to a burrowing turtle very similar to the desert tortoise found in the American southwest. One final example; two North American mammals known as the elk and the caribou are known in Europe as the reindeer and the elk. We never sing “Rudolph the Red-nosed elk”! Confused? This was the reason for creating an internationally recognized system of naming organisms. To avoid confusion, living organisms are assigned a scientific name based on Latin or Latinized words. The English sparrow is Passer domesticus or Passer domesticus (italics or underlining these two names is the official written representation of a scientific name). Using a uniform naming system allows scientists from all over the world to recognize exactly which life form a scientist is referring to. The naming process is called the binomial system of nomenclature. Passer is comparable to a surname and is called the genus, while domesticus is the specific or species name (like your given name) of the English sparrow. Now scientists can give all sparrow-like birds the genus Passer but the species name will vary. All similar genera (plural for genus) can be grouped into another, “higher” category (see below). Study the following for a more through understanding of taxonomy. Taxonomy Analogy Kingdom: Animalia Country

Diversity of life

MAXENT is now a common species distribution modeling (SDM) tool used by conservation practitioners for predicting the distribution of a species from a set of records and environmental predictors. However, datasets of species occurrence used to train the model are often biased in the geographical space because of unequal sampling effort across the study area. This bias may be a source of strong inaccuracy in the resulting model and could lead to incorrect predictions. Although a number of sampling bias correction methods have been proposed, there is no consensual guideline to account for it. We compared here the performance of five methods of bias correction on three datasets of species occurrence: one “virtual” derived from a land cover map, and two actual datasets for a turtle (Chrysemys picta) and a salamander (Plethodon cylindraceus). We subjected these datasets to four types of sampling biases corresponding to potential types of empirical biases. We applied five correction methods to the biased samples and compared the outputs of distribution models to unbiased datasets to assess the overall correction performance of each method. The results revealed that the ability of methods to correct the initial sampling bias varied greatly depending on bias type, bias intensity and species. However, the simple systematic sampling of records consistently ranked among the best performing across the range of conditions tested, whereas other methods performed more poorly in most cases. The strong effect of initial conditions on correction performance highlights the need for further research to develop a step-by-step guideline to account for sampling bias. However, this method seems to be the most efficient in correcting sampling bias and should be advised in most cases.

https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0097122&type=printable

Mapping species distributions with MAXENT using a geographically biased sample of presence data: a performance assessment of methods for correcting sampling bias.

Some people despair that most species will go extinct before they are discovered. However, such worries result from overestimates of how many species may exist, beliefs that the expertise to describe species is decreasing, and alarmist estimates of extinction rates. We argue that the number of species on Earth today is 5 ± 3 million, of which 1.5 million are named. New databases show that there are more taxonomists describing species than ever before, and their number is increasing faster than the rate of species description. Conservation efforts and species survival in secondary habitats are at least delaying extinctions. Extinction rates are, however, poorly quantified, ranging from 0.01 to 1% (at most 5%) per decade. We propose practical actions to improve taxonomic productivity and associated understanding and conservation of biodiversity.

https://science.sciencemag.org/content/sci/339/6118/413.full.pdf

Can We Name Earth's Species Before They Go Extinct?

“Imagine an electronic page for each species of organism on Earth, available everywhere by single access on command. The page contains the scientific name of the species, a pictorial or genomic presentation of the primary type specimen on which its name is based, and a summary of its diagnostic traits. The page opens out directly or by linking to other databases, such as ARKive, Ecoport, GenBank and MORPHOBANK. It comprises a summary of everything known about the species’ genome, proteome, geographical distribution, phylogenetic position, habitat, ecological relationships and, not least, its perceived practical importance for humanity.

Encyclopedia of Life

Concerns over data quality impede the use of public biodiversity databases and subsequent benefits to society. Data publication could follow the well-established publication process: with automated quality checks, peer review, and editorial decisions. This would improve data accuracy, reduce the need for users to ‘clean' the data, and might increase data use. Authors and editors would get due credit for a peer-reviewed (data) publication through use and citation metrics. Adopting standards related to data citation, accessibility, metadata, and quality control would facilitate integration of data across data sets. Here, we propose a staged publication process involving editorial and technical quality controls, of which the final (and optional) stage includes peer review, the most meritorious publication standard in science.

Biodiversity data should be published, cited, and peer reviewed

The time is ripe for a comprehensive mission to explore and document Earth's species. This calls for a campaign to educate and inspire the next generation of professional and citizen species explorers, investments in cyber-infrastructure and collections to meet the unique needs of the producers and consumers of taxonomic information, and the formation and coordination of a multi-institutional, international, transdisciplinary community of researchers, scholars and engineers with the shared objective of creating a comprehensive inventory of species and detailed map of the biosphere. We conclude that an ambitious goal to describe 10 million species in less than 50 years is attainable based on the strength of 250 years of progress, worldwide collections, existing experts, technological innovation and collaborative teamwork. Existing digitization projects are overcoming obstacles of the past, facilitating collaboration and mobilizing literature, data, images and specimens through cyber technologies. Charting ...

/pdf/mapping-the-biosphere-exploring-species-to-understand-the-3j142bm495.pdf

Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity

Key insights on needs in urban regional governance - Global urbanization (the increasing concentration in urban settlements of the increasing world population), is a driver and accelerator of shifts in diversity, new cross-scale interactions, decoupling from ecological processes, increasing risk and exposure to shocks. Responding to the challenges of urbanization demands fresh commitments to a city–regional perspective in ways that are explictly embedded in the Anthopocene bio- techno- and noospheres, to extend existing understanding of the city–nature nexus and regional scale. Three key dimensions of cities that constrain or enable constructive, cross scale responses to disturbances and extreme events include 1) shifting diversity, 2) shifting connectivity and modularity, and 3) shifting complexity. These three dimensions are characteristic of current urban processes and offer potential intervention points for local to global action.

/pdf/urbanization-in-and-for-the-anthropocene-2v0z6ub3gv.pdf

S. Van Der Leeuw

Papers

Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity

Urbanization in and for the Anthropocene