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Journal ArticleDOI

Glacial history and colonization of Europe by the blue tit Parus caeruleus

Laura Kvist, +4 more
- 01 Jul 2004 - 
- Vol. 35, Iss: 4, pp 352-359
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TLDR
It is suggested that after the last Ice Ages, the blue tit subspecies have colonized Europe from two different southern refuges following previously proposed general recolonization routes from the Balkans to northern and Central Europe, and from the Iberian Peninsula north- and eastwards.
Abstract
Mitochondrial control region sequences from European populations of the blue tit Parus caeruleus were used to reveal the Pleistocene history and the post-glacial recolonization of Europe by the species. The southern subspecies, P. c. ogliastrae was found to represent a stable population with isolation-by-distance structure harboring a lot of genetic variation, and the northern subspecies P. c. caeruleus a recently bottlenecked and expanded population. We suggest that after the last Ice Ages, the subspecies have colonized Europe from two different southern refuges following previously proposed general recolonization routes from the Balkans to northern and Central Europe, and from the Iberian Peninsula north- and eastwards. The two subspecies form a wide secondary contact zone extending from southern Spain to southern France.

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Citations
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Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

TL;DR: Oligotyping is described, a novel supervised computational method that allows researchers to investigate the diversity of closely related but distinct bacterial organisms in final operational taxonomic units identified in environmental data sets through 16S ribosomal RNA gene data by the canonical approaches.
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Brassicaceae phylogeny and trichome evolution

TL;DR: To estimate the evolutionary history of the mustard family, 113 species were sampled, representing 101 of the roughly 350 genera and 17 of the 19 tribes of the family, for the chloroplast gene ndhF and the Shimodaira-Hasegawa test (S-H test) was used to examine the utility of trichome branching patterns for describing monophyletic groups in the ndhf phylogeny.
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Dyneins across eukaryotes: a comparative genomic analysis.

TL;DR: It is confirmed that dyneins have been lost from higher plants and it is shown that this is most likely because of a single loss of cytoplasmic dynein 1 from the ancestor of Rhodophyta and Viridiplantae, followed by lineage‐specific losses of other families.
Journal ArticleDOI

'Glomus intraradices DAOM197198', a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices.

TL;DR: It is concluded that the AM fungi with the identifiers DAOM197198 and BEG195 are not G. intraradices, but fall in a clade that contains the recently described species G. irregulare.
References
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Book

Molecular Evolutionary Genetics

Masatoshi Nei
TL;DR: Recent developments of statistical methods in molecular phylogenetics are reviewed and it is shown that the mathematical foundations of these methods are not well established, but computer simulations and empirical data indicate that currently used methods produce reasonably good phylogenetic trees when a sufficiently large number of nucleotides or amino acids are used.
Journal ArticleDOI

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

TL;DR: In this article, a framework for the study of molecular variation within a single species is presented, where information on DNA haplotype divergence is incorporated into an analysis of variance format, derived from a matrix of squared-distances among all pairs of haplotypes.
Journal ArticleDOI

MEGA2 : Molecular evolutionary genetics analysis software

TL;DR: MEGA2 vastly extends the capabilities of MEGA version 1 by facilitating analyses of large datasets, enabling creation and analyses of groups of sequences, and expanding the repertoire of statistical methods for molecular evolutionary studies.
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