T
Takeshi Ara
Researcher at Kyoto University
Publications - 49
Citations - 11871
Takeshi Ara is an academic researcher from Kyoto University. The author has contributed to research in topics: Gene & Metabolome. The author has an hindex of 18, co-authored 47 publications receiving 10472 citations. Previous affiliations of Takeshi Ara include French Institute of Health and Medical Research & Nara Institute of Science and Technology.
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Journal ArticleDOI
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.
Tomoya Baba,Takeshi Ara,Miki Hasegawa,Yuki Takai,Yoshiko Okumura,Miki Baba,Kirill A. Datsenko,Masaru Tomita,Barry L. Wanner,Hirotada Mori,Hirotada Mori +10 more
TL;DR: These mutants—the ‘Keio collection’—provide a new resource not only for systematic analyses of unknown gene functions and gene regulatory networks but also for genome‐wide testing of mutational effects in a common strain background, E. coli K‐12 BW25113.
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MassBank: a public repository for sharing mass spectral data for life sciences.
Hisayuki Horai,Masanori Arita,Masanori Arita,Shigehiko Kanaya,Yoshito Nihei,Tasuku Ikeda,Kazuhiro Suwa,Yuya Ojima,Kenichi Tanaka,Satoshi Tanaka,Ken Aoshima,Yoshiya Oda,Yuji Kakazu,Miyako Kusano,Takayuki Tohge,Fumio Matsuda,Yuji Sawada,Masami Yokota Hirai,Hiroki Nakanishi,Kazutaka Ikeda,Naoshige Akimoto,Takashi Maoka,Hiroki Takahashi,Takeshi Ara,Nozomu Sakurai,Hideyuki Suzuki,Daisuke Shibata,Steffen Neumann,Takashi Iida,Ken Tanaka,Kimito Funatsu,Fumito Matsuura,Tomoyoshi Soga,Ryo Taguchi,Kazuki Saito,Takaaki Nishioka +35 more
TL;DR: MassBank is the first public repository of mass spectra of small chemical compounds for life sciences and provides a merged spectrum for each compound prepared by merging the analyzed ESI-MS(2) data on an identical compound under different collision-induced dissociation conditions.
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Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research
Masanari Kitagawa,Takeshi Ara,Mohammad Arifuzzaman,Tomoko Ioka-Nakamichi,Eiji Inamoto,Hiromi Toyonaga,Hirotada Mori +6 more
TL;DR: A complete set of cloned individual genes encoding Histidine-tagged proteins with or without GFP fused for functional genomic analysis of Escherichia coli K-12 strain should provide unique resources for systematic functional genomic approaches.
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Large-scale identification of protein-protein interaction of Escherichia coli K-12.
Mohammad Arifuzzaman,Maki Maeda,Aya Itoh,Kensaku Nishikata,Chiharu Takita,Rintaro Saito,Takeshi Ara,Kenji Nakahigashi,Hsuan Cheng Huang,Aki Hirai,Kohei Tsuzuki,Seira Nakamura,Mohammad Altaf-Ul-Amin,Taku Oshima,Tomoya Baba,Tomoya Baba,Natsuko Yamamoto,Tomoyo Kawamura,Tomoko Ioka-Nakamichi,Masanari Kitagawa,Masaru Tomita,Shigehiko Kanaya,Chieko Wada,Hirotada Mori,Hirotada Mori +24 more
TL;DR: An extended analysis of these interacting networks by bioinformatics and experimentation should provide new insights and novel strategies for E. coli systems biology.
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Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli.
Taku Oshima,Chieko Wada,Yuya Kawagoe,Takeshi Ara,Maki Maeda,Yasushi Masuda,Sota Hiraga,Hirotada Mori +7 more
TL;DR: It is proposed that Dam‐mediated methylation plays an important role in the global regulation of genes, particularly those with Fnr and CRP binding sites, particularly the ones associated with fumarate nitrate reduction and catabolite activator protein (CRP).