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Deepak K. Gupta
Researcher at Goethe University Frankfurt
Publications - 29
Citations - 1163
Deepak K. Gupta is an academic researcher from Goethe University Frankfurt. The author has contributed to research in topics: Genome & Effector. The author has an hindex of 11, co-authored 25 publications receiving 948 citations. Previous affiliations of Deepak K. Gupta include Indian Council of Agricultural Research & Indian Agricultural Research Institute.
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Journal ArticleDOI
Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh].
Sutapa Dutta,Sutapa Dutta,Giriraj Kumawat,Bikram Singh,Deepak K. Gupta,Surya Prakash Singh,Vivek Dogra,Kishor Gaikwad,Tilak Raj Sharma,R. S. Raje,Tapas K Bandhopadhya,Subhojit Datta,Mahendra Narain Singh,Fakrudin Bashasab,P. L. Kulwal,K. B. Wanjari,Rajeev K. Varshney,Douglas R. Cook,Nagendra K. Singh +18 more
TL;DR: A comprehensive set of validated genic simple sequence repeat (SSR) markers was developed as an important genomic resource for diversity analysis and genetic mapping in pigeonpea and was validated for expected allelic segregation in the reference mapping population.
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Genome-Wide Distribution and Organization of Microsatellites in Plants: An Insight into Marker Development in Brachypodium
Humira Sonah,Rupesh Deshmukh,Rupesh Deshmukh,Anshul Sharma,Vinay Singh,Deepak K. Gupta,Raju N. Gacche,Jai Chand Rana,Nagendra K. Singh,Tilak Raj Sharma +9 more
TL;DR: The observed differential patterns of SSR marker distribution would be useful for studying microsatellite evolution in a monocot–dicot system and would be helpful for genomic studies in Brachypodium and related grass species, especially for the map based cloning of the candidate gene(s).
Journal ArticleDOI
The first draft of the pigeonpea genome sequence
Nagendra K. Singh,Deepak K. Gupta,Pawan Kumar Jayaswal,Ajay Kumar Mahato,Sutapa Dutta,Surya Prakash Singh,Shefali Bhutani,Vivek Dogra,Bikram Singh,Giriraj Kumawat,Jitendra Kumar Pal,Awadhesh Pandit,Alok Singh,Hukum Rawal,Akhilesh Kumar,G. Rama Prashat,A. K. Khare,Rekha Yadav,Ranjit S. Raje,Mahendra Narain Singh,Subhojit Datta,B. Fakrudin,Keshav B. Wanjari,Rekha Kansal,Prasanta K. Dash,Pradeep K. Jain,Ramcharan Bhattacharya,Kishor Gaikwad,Trilochan Mohapatra,Ramamurthy Srinivasan,Tilak Raj Sharma +30 more
TL;DR: This is the first plant genome sequence completed entirely through a network of Indian institutions led by the Indian Council of Agricultural Research and provides a valuable resource for the pigeonpea variety improvement.
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A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms
Himabindu Kudapa,Arvind K. Bharti,Steven B. Cannon,Steven B. Cannon,Andrew Farmer,Benjamin Mulaosmanovic,Robin Kramer,Abhishek Bohra,Nathan T. Weeks,John A. Crow,Reetu Tuteja,Trushar Shah,Sutapa Dutta,Deepak K. Gupta,Alok Singh,Kishor Gaikwad,Tilak Raj Sharma,Gregory D. May,Nagendra K. Singh,Rajeev K. Varshney,Rajeev K. Varshney +20 more
TL;DR: In this paper, a comprehensive transcriptome assembly for pigeonpea has been developed by analyzing 128.9 million short Illumina GA IIx single end reads, 2.19 million single end FLX/454 reads, and 18 353 Sanger expressed sequenced tags from more than 16 genotypes.
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Draft Genome of the Wheat Rust Pathogen (Puccinia triticina) Unravels Genome-Wide Structural Variations during Evolution.
Kanti Kiran,Hukam C. Rawal,Himanshu Dubey,Rajdeep Jaswal,B. N. Devanna,Deepak K. Gupta,Subhash C. Bhardwaj,Pramod Prasad,Dharam Pal,Parveen Chhuneja,P. Balasubramanian,Jitendra Kumar,M. Swami,Amolkumar U. Solanke,Kishor Gaikwad,Nagendra K. Singh,Tilak Raj Sharma +16 more
TL;DR: In insights into the genome structure, genome organization, molecular basis of variation, and pathogenicity of P. triticina, it is demonstrated that Race77 has more virulence factors than Race 106, which may be responsible for the greater degree of adaptation of this pathogen.