A
Arnaud Couloux
Researcher at French Alternative Energies and Atomic Energy Commission
Publications - 186
Citations - 22269
Arnaud Couloux is an academic researcher from French Alternative Energies and Atomic Energy Commission. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 66, co-authored 181 publications receiving 19383 citations. Previous affiliations of Arnaud Couloux include Commissariat à l'énergie atomique et aux énergies alternatives & University of Évry Val d'Essonne.
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Journal ArticleDOI
The map-based sequence of the rice genome
Takashi Matsumoto,Jianzhong Wu,Hiroyuki Kanamori,Yuichi Katayose,Masaki Fujisawa,Nobukazu Namiki,Hiroshi Mizuno,Kimiko Yamamoto,Baltazar A. Antonio,Tomoya Baba,Katsumi Sakata,Yoshiaki Nagamura,Hiroyoshi Aoki,Koji Arikawa,Kohei Arita,Takahito Bito,Yoshino Chiden,Nahoko Fujitsuka,Rie Fukunaka,Masao Hamada,Chizuko Harada,Akiko Hayashi,Saori Hijishita,Mikiko Honda,Satomi Hosokawa,Yoko Ichikawa,Atsuko Idonuma,Masumi Iijima,Michiko Ikeda,Maiko Ikeno,Kazue Ito,Sachie Ito,Tomoko Ito,Yuichi Ito,Yukiyo Ito,Aki Iwabuchi,Kozue Kamiya,Wataru Karasawa,Kanako Kurita,Satoshi Katagiri,Ari Kikuta,Harumi Kobayashi,Noriko Kobayashi,Kayo Machita,Tomoko Maehara,Masatoshi Masukawa,Tatsumi Mizubayashi,Yoshiyuki Mukai,Hideki Nagasaki,Yuko Nagata,Shinji Naito,Marina Nakashima,Yuko Nakama,Yumi Nakamichi,Mari Nakamura,Ayano Meguro,Manami Negishi,Isamu Ohta,Tomoya Ohta,Masako Okamoto,Nozomi Ono,Shoko Saji,Miyuki Sakaguchi,Kumiko Sakai,Michie Shibata,Takanori Shimokawa,Jianyu Song,Yuka Takazaki,Kimihiro Terasawa,Mika Tsugane,Kumiko Tsuji,Shigenori Ueda,Kazunori Waki,Harumi Yamagata,Mayu Yamamoto,Shinichi Yamamoto,Hiroko Yamane,Shoji Yoshiki,Rie Yoshihara,Kazuko Yukawa,Huisun Zhong,Masahiro Yano,Takuji Sasaki,Qiaoping Yuan,Shu Ouyang,Jia Liu,Kristine Jones,Kristen Gansberger,Kelly Moffat,Jessica Hill,Jayati Bera,Douglas Fadrosh,Shaohua Jin,Shivani Johri,Mary Kim,Larry Overton,Matthew Reardon,Tamara Tsitrin,Hue Vuong,Bruce Weaver,Anne Ciecko,Luke J. Tallon,Jacqueline Jackson,Grace Pai,Susan Van Aken,T. Utterback,Steve Reidmuller,Tamara Feldblyum,Joseph Hsiao,Victoria Zismann,Stacey E. Iobst,Aymeric R. De Vazeille,C. Robin Buell,Kai Ying,Ying Li,Tingting Lu,Y. Huang,Qiang Zhao,Qi Feng,Lei Zhang,Jingjie Zhu,Qijun Weng,Jie Mu,Yiqi Lu,Danlin Fan,Yilei Liu,Jianping Guan,Yujun Zhang,Shuliang Yu,Xiaohui Liu,Yu Zhang,Guofan Hong,Bin Han,Nathalie Choisne,Nadia Demange,Gisela Orjeda,Sylvie Samain,Laurence Cattolico,Eric Pelletier,Arnaud Couloux,Béatrice Segurens,Patrick Wincker,Angélique D'Hont,Claude Scarpelli,Jean Weissenbach,Marcel Salanoubat,Francis Quetier,Yeisoo Yu,Hyeran Kim,Teri Rambo,Jennifer Currie,Kristi Collura,Meizhong Luo,Tae-Jin Yang,Jetty S.S. Ammiraju,Friedrich Engler,Carol Soderlund,Rod A. Wing,Lance E. Palmer,Melissa De La Bastide,Lori Spiegel,Lidia Nascimento,Theresa Zutavern,A. O'Shaughnessy,Sujit Dike,Neilay Dedhia,R. Preston,Vivekanand Balija,W. Richard McCombie,Teh Yuan Chow,Hong-Hwa Chen,Mei-Chu Chung,Ching San Chen,J. F. Shaw,Hong Pang Wu,Kwang-Jen Hsiao,Ya Ting Chao,Mu Kuei Chu,Chia Hsiung Cheng,Ai Ling Hour,Pei Fang Lee,Shu Jen Lin,Yao-Cheng Lin,John Yu Liou,Shu Mei Liu,Yue-Ie C. Hsing,Saurabh Raghuvanshi,Amitabh Mohanty,Arvind K. Bharti,Arvind K. Bharti,Anupama Gaur,Vipin Gupta,Dibyendu Kumar,Vydianathan Ravi,Shubha Vij,Anita Kapur,Parul Khurana,Paramjit Khurana,Jitendra P. Khurana,Akhilesh K. Tyagi,Kishor Gaikwad,Alok Singh,Vivek Dalal,Subodh K. Srivastava,Anupam Dixit,Ajit K. Pal,Irfan Ahmad Ghazi,Mahavir Yadav,A. Pandit,Atul Bhargava,K. Sureshbabu,Kamlesh Batra,Tilak Raj Sharma,Trilochan Mohapatra,Nagendra K. Singh,Joachim Messing,Amy Bronzino Nelson,Galina Fuks,Steve Kavchok,Gladys Keizer,Eric Linton Victor Llaca,Rentao Song,Bahattin Tanyolac,Steve Young,Kim Yul Ho,Jang Ho Hahn,G. Sangsakoo,Apichart Vanavichit,Luiz Anderson Teixeira de Mattos,Paulo Dejalma Zimmer,Gaspar Malone,Odir Antônio Dellagostin,Antonio Costa de Oliveira,Michael W. Bevan,Ian Bancroft,Patrick Minx,Holly Cordum,Richard K. Wilson,Zhukuan Cheng,Weiwei Jin,Jiming Jiang,Sally A. Leong,Hisakazu Iwama,Takashi Gojobori,Takeshi Itoh,Takeshi Itoh,Yoshihito Niimura,Yasuyuki Fujii,Takuya Habara,Hiroaki Sakai,Hiroaki Sakai,Yoshiharu Sato,Gregory Wilson,Kiran Kumar,Susan R. McCouch,Nikoleta Juretic,Douglas R. Hoen,Stephen I. Wright,Richard Bruskiewich,Thomas E. Bureau,Akio Miyao,Hirohiko Hirochika,Tomotaro Nishikawa,Koh Ichi Kadowaki,Masahiro Sugiura,Benjamin Burr +265 more
TL;DR: A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Journal ArticleDOI
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Rudi Appels,Rudi Appels,Kellye Eversole,Nils Stein,Nils Stein,Catherine Feuillet,Beat Keller,Jane Rogers,Curtis J. Pozniak,Frédéric Choulet,Assaf Distelfeld,Jesse Poland,Gil Ronen,Andrew G. Sharpe,Omer Barad,Kobi Baruch,Gabriel Keeble-Gagnère,Martin Mascher,Gil Ben-Zvi,Ambre-Aurore Josselin,Axel Himmelbach,François Balfourier,Juan J. Gutierrez-Gonzalez,Matthew J. Hayden,Chushin Koh,Gary J. Muehlbauer,Raj K. Pasam,Etienne Paux,Philippe Rigault,Josquin Tibbits,Vijay K. Tiwari,Manuel Spannagl,Daniel Lang,Heidrun Gundlach,Georg Haberer,Klaus F. X. Mayer,Danara Ormanbekova,Verena M. Prade,Hana Šimková,Thomas Wicker,David Swarbreck,Hélène Rimbert,Marius Felder,Nicolas Guilhot,Gemy Kaithakottil,Jens Keilwagen,Philippe Leroy,Thomas Lux,Sven Twardziok,Luca Venturini,Angéla Juhász,Michael Abrouk,Iris Fischer,Cristobal Uauy,Philippa Borrill,Ricardo H. Ramirez-Gonzalez,Dominique Arnaud,Smahane Chalabi,Boulos Chalhoub,Boulos Chalhoub,Aron T. Cory,Raju Datla,Mark W. Davey,John Jacobs,Stephen J. Robinson,Burkhard Steuernagel,Fred van Ex,Brande B. H. Wulff,Moussa Benhamed,Abdelhafid Bendahmane,Lorenzo Concia,David Latrasse,Jan Bartoš,Arnaud Bellec,Hélène Bergès,Jaroslav Doležel,Zeev Frenkel,Bikram S. Gill,Abraham B. Korol,Thomas Letellier,Odd-Arne Olsen,Kuldeep Singh,Miroslav Valárik,Edwin A. G. van der Vossen,Sonia Vautrin,Song Weining,Tzion Fahima,Vladimir Glikson,Dina Raats,Jarmila Číhalíková,Helena Toegelová,Jan Vrána,Pierre Sourdille,Benoit Darrier,D. Barabaschi,Luigi Cattivelli,Pilar Hernández,Sergio Gálvez,Hikmet Budak,Jonathan D. G. Jones,Kamil Witek,Guotai Yu,Ian Small,Joanna Melonek,Ruonan Zhou,Tatiana Belova,Kostya Kanyuka,Robert King,Kirby T. Nilsen,Sean Walkowiak,Richard D. Cuthbert,Ron Knox,Krysta Wiebe,Daoquan Xiang,Antje Rohde,Timothy Golds,Jana Čížková,Bala Ani Akpinar,Sezgi Biyiklioglu,Liangliang Gao,Amidou N’Daiye,Marie Kubaláková,Jan Šafář,Françoise Alfama,Anne-Françoise Adam-Blondon,Raphael Flores,Claire Guerche,Mikaël Loaec,Hadi Quesneville,Janet A. Condie,Jennifer Ens,Ron MacLachlan,Yifang Tan,Adriana Alberti,Jean-Marc Aury,Valérie Barbe,Arnaud Couloux,Corinne Cruaud,Karine Labadie,Sophie Mangenot,Patrick Wincker,Patrick Wincker,Gaganpreet Kaur,Ming-Cheng Luo,Sunish K. Sehgal,Parveen Chhuneja,O. P. Gupta,Suruchi Jindal,Parampreet Kaur,Palvi Malik,Priti Sharma,Bharat Yadav,Nagendra K. Singh,Jitendra P. Khurana,Chanderkant Chaudhary,Paramjit Khurana,Vinod Kumar,Ajay Kumar Mahato,Saloni Mathur,Amitha Mithra Sevanthi,Naveen Sharma,Ram Sewak Singh Tomar,Kateřina Holušová,Ondřej Plíhal,Matthew D. Clark,Matthew D. Clark,Darren Heavens,George Kettleborough,Jon Wright,Barbora Balcárková,Yuqin Hu,Elena A. Salina,Nikolai V. Ravin,Nikolai V. Ravin,Konstantin G. Skryabin,Konstantin G. Skryabin,Alexey V. Beletsky,Vitaly V. Kadnikov,Andrey V. Mardanov,Michail A. Nesterov,Andrey L. Rakitin,Ekaterina M. Sergeeva,Hirokazu Handa,Hiroyuki Kanamori,Satoshi Katagiri,Fuminori Kobayashi,Shuhei Nasuda,Tsuyoshi Tanaka,Jianzhong Wu,Federica Cattonaro,Min Jiumeng,Karl G. Kugler,Matthias Pfeifer,Simen Rød Sandve,Xu Xun,Bujie Zhan,Jacqueline Batley,Philipp E. Bayer,David Edwards,Satomi Hayashi,Zuzana Tulpová,Paul Visendi,Licao Cui,Xianghong Du,Kewei Feng,Xiaojun Nie,Wei Tong,Le Wang +207 more
TL;DR: This annotated reference sequence of wheat is a resource that can now drive disruptive innovation in wheat improvement, as this community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
Journal ArticleDOI
The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young,Frédéric Debellé,Frédéric Debellé,Giles E. D. Oldroyd,René Geurts,Steven B. Cannon,Steven B. Cannon,Michael K. Udvardi,Vagner A. Benedito,Klaus F. X. Mayer,Jérôme Gouzy,Jérôme Gouzy,Heiko Schoof,Yves Van de Peer,Sebastian Proost,Douglas R. Cook,Blake C. Meyers,Manuel Spannagl,Foo Cheung,Stéphane De Mita,Vivek Krishnakumar,Heidrun Gundlach,Shiguo Zhou,Joann Mudge,Arvind K. Bharti,Jeremy D. Murray,Marina Naoumkina,Benjamin D. Rosen,Kevin A. T. Silverstein,Haibao Tang,Stephane Rombauts,Patrick X. Zhao,Peng Zhou,Valérie Barbe,Philippe Bardou,Philippe Bardou,Michael Bechner,Arnaud Bellec,Anne Berger,Hélène Bergès,Shelby L. Bidwell,Ton Bisseling,Ton Bisseling,Nathalie Choisne,Arnaud Couloux,Roxanne Denny,Shweta Deshpande,Xinbin Dai,Jeff J. Doyle,Anne Marie Dudez,Anne Marie Dudez,Andrew Farmer,Stéphanie Fouteau,Carolien Franken,Chrystel Gibelin,Chrystel Gibelin,John Gish,Steven A. Goldstein,Alvaro J. González,Pamela J. Green,Asis Hallab,Marijke Hartog,Axin Hua,Sean Humphray,Dong-Hoon Jeong,Yi Jing,Anika Jöcker,Steve Kenton,Dong-Jin Kim,Dong-Jin Kim,Kathrin Klee,Hongshing Lai,Chunting Lang,Shaoping Lin,Simone L. Macmil,Ghislaine Magdelenat,Lucy Matthews,Jamison McCorrison,Erin L. Monaghan,Jeong Hwan Mun,Jeong Hwan Mun,Fares Z. Najar,Christine Nicholson,Céline Noirot,Majesta O'Bleness,Charles Paule,Julie Poulain,Florent Prion,Florent Prion,Baifang Qin,Chunmei Qu,Ernest F. Retzel,Claire Riddle,Erika Sallet,Erika Sallet,Sylvie Samain,Nicolas Samson,Nicolas Samson,Iryna Sanders,Olivier Saurat,Olivier Saurat,Claude Scarpelli,Thomas Schiex,Béatrice Segurens,Andrew J. Severin,D. Janine Sherrier,Ruihua Shi,Sarah Sims,Susan R. Singer,Senjuti Sinharoy,Lieven Sterck,Agnès Viollet,Bing Bing Wang,Keqin Wang,Mingyi Wang,Xiaohong Wang,Jens Warfsmann,Jean Weissenbach,Doug White,James D. White,Graham B. Wiley,Patrick Wincker,Yanbo Xing,Limei Yang,Ziyun Yao,Fu Ying,Jixian Zhai,Liping Zhou,Antoine Zuber,Antoine Zuber,Jean Dénarié,Jean Dénarié,Richard A. Dixon,Gregory D. May,David C. Schwartz,Jane Rogers,Francis Quetier,Christopher D. Town,Bruce A. Roe +138 more
TL;DR: The draft sequence of the M. truncatula genome sequence is described, a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics, which provides significant opportunities to expand al falfa’s genomic toolbox.
Journal ArticleDOI
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
Joelle Amselem,Christina A. Cuomo,Jan A. L. van Kan,Muriel Viaud,Ernesto P. Benito,Arnaud Couloux,Pedro M. Coutinho,Ronald P. de Vries,Paul S. Dyer,Sabine Fillinger,Elisabeth Fournier,Elisabeth Fournier,Lilian Gout,Matthias Hahn,Linda M. Kohn,Nicolas Lapalu,Kim M. Plummer,Jean-Marc Pradier,Emmanuel Quévillon,Emmanuel Quévillon,Amir Sharon,Adeline Simon,Arjen ten Have,Bettina Tudzynski,Paul Tudzynski,Patrick Wincker,Marion Andrew,Véronique Anthouard,Ross E. Beever,Rolland Beffa,Isabelle Benoit,Ourdia Bouzid,Baptiste Brault,Zehua Chen,Mathias Choquer,Mathias Choquer,Jérôme Collemare,Jérôme Collemare,Pascale Cotton,Etienne Danchin,Corinne Da Silva,Angélique Gautier,Corinne Giraud,Tatiana Giraud,Celedonio González,Sandrine Grossetete,Ulrich Güldener,Bernard Henrissat,Barbara J. Howlett,Chinnappa D. Kodira,Matthias Kretschmer,Anne Lappartient,Michaela Leroch,Caroline Levis,Evan Mauceli,Cécile Neuvéglise,Birgitt Oeser,Matthew D. Pearson,Julie Poulain,Nathalie Poussereau,Hadi Quesneville,Christine Rascle,Julia Schumacher,Béatrice Segurens,Adrienne Sexton,Evelyn Silva,Catherine Sirven,Darren M. Soanes,Nicholas J. Talbot,Matthew D. Templeton,Chandri Yandava,Oded Yarden,Qiandong Zeng,Jeffrey A. Rollins,Marc-Henri Lebrun,Marc-Henri Lebrun,Marty Dickman +76 more
TL;DR: Comparative genome analysis revealed the basis of differing sexual mating compatibility systems between S. sclerotiorum and B. cinerea, and shed light on the evolutionary and mechanistic bases of the genetically complex traits of necrotrophic pathogenicity and sexual mating.
Journal ArticleDOI
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
Francis Martin,Annegret Kohler,Claude Murat,Raffaella Balestrini,Pedro M. Coutinho,Olivier Jaillon,Barbara Montanini,Emmanuelle Morin,Benjamin Noel,Riccardo Percudani,Bettina Porcel,Andrea Rubini,Antonella Amicucci,Joelle Amselem,Véronique Anthouard,Sergio Arcioni,François Artiguenave,Jean-Marc Aury,Paola Ballario,Angelo Bolchi,Andrea Brenna,Annick Brun,Marc Buée,Brandi L. Cantarel,Gérard Chevalier,Arnaud Couloux,Corinne Da Silva,Sébastien Duplessis,Stefano Ghignone,Benoît Hilselberger,Mirco Iotti,Benoit Marçais,Antonietta Mello,Michele Miranda,Giovanni Pacioni,Hadi Quesneville,Claudia Riccioni,Roberta Ruotolo,Richard Splivallo,Vilberto Stocchi,Emilie Tisserant,Arturo R. Viscomi,Alessandra Zambonelli,Elisa Zampieri,Bernard Henrissat,Marc-Henri Lebrun,Francesco Paolocci,Paola Bonfante,Simone Ottonello,Patrick Wincker +49 more
TL;DR: The sequence of the haploid genome of T. melanosporum is reported, which at ∼125 megabases is the largest and most complex fungal genome sequenced so far and results from a proliferation of transposable elements accounting for ∼58% of the genome.