L
Linda Madisen
Researcher at Allen Institute for Brain Science
Publications - 41
Citations - 13783
Linda Madisen is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Optogenetics & Gene. The author has an hindex of 25, co-authored 40 publications receiving 10448 citations.
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Journal ArticleDOI
A robust and high-throughput Cre reporting and characterization system for the whole mouse brain
Linda Madisen,Theresa A. Zwingman,Susan M. Sunkin,Seung Wook Oh,Hatim A. Zariwala,Hong Gu,Lydia Ng,Richard D. Palmiter,Michael Hawrylycz,Allan R. Jones,Ed S. Lein,Hongkui Zeng +11 more
TL;DR: A set of Cre reporter mice with strong, ubiquitous expression of fluorescent proteins of different spectra is generated and enables direct visualization of fine dendritic structures and axonal projections of the labeled neurons, which is useful in mapping neuronal circuitry, imaging and tracking specific cell populations in vivo.
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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Bosiljka Tasic,Vilas Menon,Thuc Nghi Nguyen,Tae Kyung Kim,Tim Jarsky,Zizhen Yao,Boaz P. Levi,Lucas T. Gray,Staci A. Sorensen,Tim A. Dolbeare,Darren Bertagnolli,Jeff Goldy,Nadiya V. Shapovalova,Sheana Parry,Changkyu Lee,Kimberly A. Smith,Amy Bernard,Linda Madisen,Susan M. Sunkin,Michael Hawrylycz,Christof Koch,Hongkui Zeng +21 more
TL;DR: This work constructed a cellular taxonomy of one cortical region, primary visual cortex, in adult mice on the basis of single-cell RNA sequencing and identified 49 transcriptomic cell types, including 23 GABAergic, 19 glutamatergic and 7 non-neuronal types.
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Shared and distinct transcriptomic cell types across neocortical areas
Bosiljka Tasic,Zizhen Yao,Lucas T. Graybuck,Kimberly A. Smith,Thuc Nghi Nguyen,Darren Bertagnolli,Jeff Goldy,Emma Garren,Michael N. Economo,Sarada Viswanathan,Osnat Penn,Trygve E. Bakken,Vilas Menon,Vilas Menon,Jeremy A. Miller,Olivia Fong,Karla E. Hirokawa,Kanan Lathia,Christine Rimorin,Michael Tieu,Rachael Larsen,Tamara Casper,Eliza Barkan,Matthew Kroll,Sheana Parry,Nadiya V. Shapovalova,Daniel Hirschstein,Julie Pendergraft,Heather A. Sullivan,Tae Kyung Kim,Aaron Szafer,Nick Dee,Peter A. Groblewski,Ian R. Wickersham,Ali Cetin,Julie A. Harris,Boaz P. Levi,Susan M. Sunkin,Linda Madisen,Tanya L. Daigle,Loren L. Looger,Amy Bernard,John W. Phillips,Ed S. Lein,Michael Hawrylycz,Karel Svoboda,Allan R. Jones,Christof Koch,Hongkui Zeng +48 more
TL;DR: This study establishes a combined transcriptomic and projectional taxonomy of cortical cell types from functionally distinct areas of the adult mouse cortex and identifies 133 transcriptomic types of glutamatergic neurons to their long-range projection specificity.
Journal ArticleDOI
A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing
Linda Madisen,Tianyi Mao,Tianyi Mao,Henner Koch,Jia-Min Zhuo,Antal Berényi,Shigeyoshi Fujisawa,Yun Wei A Hsu,Alfredo J. Garcia,Xuan Gu,Sebastien Zanella,Jolene Kidney,Hong Gu,Yimei Mao,Bryan M. Hooks,Edward S. Boyden,György Buzsáki,Jan-Marino Ramirez,Allan R. Jones,Karel Svoboda,Xue Han,Eric E. Turner,Hongkui Zeng +22 more
TL;DR: The robust, consistent and inducible nature of the ChR2 mice represents a significant advance over previous lines, and the Arch-ER2 and eNpHR3.0 mice are to the authors' knowledge the first demonstration of successful conditional transgenic optogenetic silencing.
Journal ArticleDOI
Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen,Aleena R. Garner,Daisuke Shimaoka,Amy S. Chuong,Nathan C. Klapoetke,Lu Li,Alexander van der Bourg,Yusuke Niino,Ladan Egolf,Claudio Monetti,Hong Gu,Maya Mills,Adrian Cheng,Bosiljka Tasic,Thuc Nghi Nguyen,Susan M. Sunkin,Andrea Benucci,Andras Nagy,Atsushi Miyawaki,Fritjof Helmchen,Ruth M. Empson,Thomas Knöpfel,Edward S. Boyden,R. Clay Reid,Matteo Carandini,Hongkui Zeng +25 more
TL;DR: These novel transgenic lines greatly expand the ability to monitor and manipulate neuronal activities with increased specificity, and develop driver and double reporter mouse lines and viral vectors using the Cre/Flp and Cre/Dre double recombinase systems.