S
Stuart Stephen
Researcher at Commonwealth Scientific and Industrial Research Organisation
Publications - 19
Citations - 5867
Stuart Stephen is an academic researcher from Commonwealth Scientific and Industrial Research Organisation. The author has contributed to research in topics: Population & Gene. The author has an hindex of 16, co-authored 19 publications receiving 5228 citations. Previous affiliations of Stuart Stephen include University of Queensland.
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Journal ArticleDOI
Ultraconserved Elements in the Human Genome
Gill Bejerano,Michael Pheasant,Igor V. Makunin,Stuart Stephen,W. James Kent,John S. Mattick,David Haussler +6 more
TL;DR: There are 481 segments longer than 200 base pairs that are absolutely conserved between orthologous regions of the human, rat, and mouse genomes, which represent a class of genetic elements whose functions and evolutionary origins are yet to be determined, but which are more highly conserving between these species than are proteins.
Journal ArticleDOI
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
Shichen Wang,Debbie Wong,Kerrie Forrest,Alexandra M. Allen,Shiaoman Chao,Bevan Emma Huang,Marco Maccaferri,Silvio Salvi,Sara Giulia Milner,Luigi Cattivelli,Anna M. Mastrangelo,Alex Whan,Stuart Stephen,Gary L A Barker,Ralf Wieseke,Joerg Plieske,Morten Lillemo,Diane E. Mather,Rudi Appels,Rudy Dolferus,Gina Brown-Guedira,Abraham B. Korol,Alina Akhunova,Catherine Feuillet,Catherine Feuillet,Jérôme Salse,Michele Morgante,Curtis J. Pozniak,Ming-Cheng Luo,Jan Dvorak,Matthew K. Morell,Jorge Dubcovsky,Jorge Dubcovsky,Martin W. Ganal,Roberto Tuberosa,Cindy Lawley,Ivan Mikoulitch,Colin Cavanagh,Keith J. Edwards,Matthew J. Hayden,Eduard Akhunov +40 more
TL;DR: The developed array and cluster identification algorithms provide an opportunity to infer detailed haplotype structure in polyploid wheat and will serve as an invaluable resource for diversity studies and investigating the genetic basis of trait variation in wheat.
Journal ArticleDOI
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars.
Colin Cavanagh,Shiaoman Chao,Shichen Wang,Bevan Emma Huang,Stuart Stephen,Seifollah Kiani,Kerrie Forrest,Cyrille Saintenac,Gina Brown-Guedira,Alina Akhunova,Deven R. See,Guihua Bai,Michael O. Pumphrey,Luxmi Tomar,Debbie Wong,Stephan Kong,Matthew P. Reynolds,Marta Lopez da Silva,Harold E. Bockelman,Luther E. Talbert,James A. Anderson,Susanne Dreisigacker,Stephen Baenziger,Arron H. Carter,Viktor Korzun,Peter L. Morrell,Jorge Dubcovsky,Jorge Dubcovsky,Matthew K. Morell,Mark E. Sorrells,Matthew J. Hayden,Eduard Akhunov +31 more
TL;DR: It is shown that selection likely acts on distinct targets or multiple functionally equivalent alleles in different portions of the geographic range of wheat, suggesting either weak selection pressure or temporal variation in the targets of directional selection during breeding probably associated with changing agricultural practices or environmental conditions.
Journal ArticleDOI
Tiny RNAs associated with transcription start sites in animals.
Ryan J. Taft,Evgeny A. Glazov,Nicole Cloonan,Cas Simons,Stuart Stephen,Geoffrey J. Faulkner,Timo Lassmann,Alistair R. R. Forrest,Sean M. Grimmond,Kate Schroder,Katharine M. Irvine,Takahiro Arakawa,Mari M. Nakamura,Atsutaka Kubosaki,Kengo Hayashida,Chika Kawazu,Mitsuyoshi Murata,Hiromi Nishiyori,Shiro Fukuda,Jun Kawai,Carsten O. Daub,David A. Hume,David A. Hume,Harukazu Suzuki,Valerio Orlando,Piero Carninci,Yoshihide Hayashizaki,John S. Mattick +27 more
TL;DR: These tiny RNAs with a modal length of 18 nt that map within −60 to +120 nt of transcription start sites (TSSs) in human, chicken and Drosophila suggest that tiRNAs may be a general feature of transcription in metazoa and possibly all eukaryotes.
Journal Article
Tiny RNAs associated with transcription start sites in animals (vol 41, pg 572, 2009)
Ryan J. Taft,Evgeny A. Glazov,Nicole Cloonan,Cas Simons,Stuart Stephen,Geoffrey J. Faulkner,Timo Lassmann,Arr Forrest,Sean M. Grimmond,Kate Schroder,Katharine M. Irvine,Taku Arakawa,Masayuki Nakamura,Atsutaka Kubosaki,Kengo Hayashida,Chika Kawazu,Mitsuyoshi Murata,Hiromi Nishiyori,Shiro Fukuda,Jun Kawai,Carsten O. Daub,David A. Hume,Harukazu Suzuki,Orlando,Piero Carninci,Yoshihide Hayashizaki,John S. Mattick +26 more