J
Jérôme Salse
Researcher at Institut national de la recherche agronomique
Publications - 98
Citations - 13473
Jérôme Salse is an academic researcher from Institut national de la recherche agronomique. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 46, co-authored 91 publications receiving 11161 citations. Previous affiliations of Jérôme Salse include Centre national de la recherche scientifique & University of Perpignan.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
Shichen Wang,Debbie Wong,Kerrie Forrest,Alexandra M. Allen,Shiaoman Chao,Bevan Emma Huang,Marco Maccaferri,Silvio Salvi,Sara Giulia Milner,Luigi Cattivelli,Anna M. Mastrangelo,Alex Whan,Stuart Stephen,Gary L A Barker,Ralf Wieseke,Joerg Plieske,Morten Lillemo,Diane E. Mather,Rudi Appels,Rudy Dolferus,Gina Brown-Guedira,Abraham B. Korol,Alina Akhunova,Catherine Feuillet,Catherine Feuillet,Jérôme Salse,Michele Morgante,Curtis J. Pozniak,Ming-Cheng Luo,Jan Dvorak,Matthew K. Morell,Jorge Dubcovsky,Jorge Dubcovsky,Martin W. Ganal,Roberto Tuberosa,Cindy Lawley,Ivan Mikoulitch,Colin Cavanagh,Keith J. Edwards,Matthew J. Hayden,Eduard Akhunov +40 more
TL;DR: The developed array and cluster identification algorithms provide an opportunity to infer detailed haplotype structure in polyploid wheat and will serve as an invaluable resource for diversity studies and investigating the genetic basis of trait variation in wheat.
Journal ArticleDOI
The genome of Eucalyptus grandis
Alexander Andrew Myburg,Dario Grattapaglia,Dario Grattapaglia,Gerald A. Tuskan,Gerald A. Tuskan,Uffe Hellsten,Richard D. Hayes,Jane Grimwood,Jerry Jenkins,Erika Lindquist,Hope Tice,Diane Bauer,David Goodstein,Inna Dubchak,Alexandre Poliakov,Eshchar Mizrachi,Anand Raj Kumar Kullan,Steven G. Hussey,Desre Pinard,Karen Van der Merwe,Pooja Singh,Ida Van Jaarsveld,Orzenil B. Silva-Junior,Roberto C. Togawa,Marília de Castro Rodrigues Pappas,Danielle A. Faria,Carolina Sansaloni,Cesar Petroli,Xiaohan Yang,Priya Ranjan,Timothy J. Tschaplinski,Chu-Yu Ye,Ting Li,Lieven Sterck,Kevin Vanneste,Florent Murat,Marçal Soler,Hélène San Clemente,Naijib Saidi,Hua Cassan-Wang,Christophe Dunand,Charles A. Hefer,Charles A. Hefer,Erich Bornberg-Bauer,Anna R. Kersting,Anna R. Kersting,Kelly J. Vining,Vindhya Amarasinghe,Martin Ranik,Sushma Naithani,Justin Elser,Alexander Boyd,Aaron Liston,Joseph W. Spatafora,Palitha Dharmwardhana,Rajani Raja,Christopher M. Sullivan,Elisson Romanel,Elisson Romanel,Marcio Alves-Ferreira,Carsten Külheim,William J. Foley,Victor Carocha,Jorge A. P. Paiva,David Kudrna,Sérgio Hermínio Brommonschenkel,Giancarlo Pasquali,Margaret Byrne,Philippe Rigault,Josquin Tibbits,Antanas V. Spokevicius,Rebecca C. Jones,Dorothy A. Steane,Dorothy A. Steane,René E. Vaillancourt,Brad M. Potts,Fourie Joubert,Kerrie Barry,Georgios J. Pappas,Steven H. Strauss,Pankaj Jaiswal,Jacqueline Grima-Pettenati,Jérôme Salse,Yves Van de Peer,Yves Van de Peer,Daniel S. Rokhsar,Jeremy Schmutz,Jeremy Schmutz +87 more
TL;DR: Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes, which shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils.
Journal ArticleDOI
The genome of Theobroma cacao
Xavier Argout,Jérôme Salse,Jean-Marc Aury,Jean-Marc Aury,Jean-Marc Aury,Mark J. Guiltinan,Gaëtan Droc,Jérôme Gouzy,Mathilde Allègre,Cristian Chaparro,Thierry Legavre,Siela N. Maximova,Michael Abrouk,Florent Murat,Olivier Fouet,Julie Poulain,Julie Poulain,Julie Poulain,Manuel Ruiz,Yolande Roguet,Maguy Rodier-Goud,Jose Fernandes Barbosa-Neto,François Sabot,Dave Kudrna,Jetty S.S. Ammiraju,Stephan C. Schuster,John E. Carlson,John E. Carlson,Erika Sallet,Thomas Schiex,Anne Dievart,Melissa Kramer,Laura Gelley,Zi Shi,Aurélie Bérard,Christopher Viot,Michel Boccara,Ange-Marie Risterucci,Valentin Guignon,Xavier Sabau,Michael J. Axtell,Zhaorong Ma,Yufan Zhang,Yufan Zhang,Spencer Brown,Mickael Bourge,Wolfgang Golser,Xiang Song,Didier Clément,Ronan Rivallan,Mathias Tahi,Joseph Moroh Akaza,Bertrand Pitollat,Karina Peres Gramacho,Angélique D'Hont,Dominique Brunel,Diógenes Infante,Ismael S. Kébé,Pierre Costet,Rod A. Wing,W. Richard McCombie,Emmanuel Guiderdoni,Francis Quetier,Olivier Panaud,Patrick Wincker,Patrick Wincker,Patrick Wincker,Stéphanie Bocs,Claire Lanaud +68 more
TL;DR: This work sequenced and assembled the draft genome of Theobroma cacao, an economically important tropical-fruit tree crop that is the source of chocolate, and proposed an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions.
Journal ArticleDOI
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
Shaogui Guo,Shaogui Guo,Jianguo Zhang,Jianguo Zhang,Honghe Sun,Honghe Sun,Jérôme Salse,William J. Lucas,Haiying Zhang,Yi Zheng,Linyong Mao,Yi Ren,Zhiwen Wang,Jiumeng Min,Xiaosen Guo,Florent Murat,Byung-Kook Ham,Zhaoliang Zhang,Shan Gao,Mingyun Huang,Yimin Xu,Silin Zhong,Aureliano Bombarely,Lukas A. Mueller,Hong Zhao,Hongju He,Yan Zhang,Zhonghua Zhang,Sanwen Huang,Tao Tan,Erli Pang,Kui Lin,Qun Hu,Hanhui Kuang,Peixiang Ni,Peixiang Ni,Bo Wang,Jingan Liu,Qinghe Kou,Wenju Hou,Xiaohua Zou,Jiao Jiang,Guoyi Gong,Kathrin Klee,Heiko Schoof,Ying Huang,Xuesong Hu,Shanshan Dong,Dequan Liang,Juan Wang,Kui Wu,Yang Xia,Xiang Zhao,Zequn Zheng,Miao Xing,Xinming Liang,Bangqing Huang,Tian Lv,Junyi Wang,Ye Yin,Hongping Yi,Ruiqiang Li,Mingzhu Wu,Amnon Levi,Xingping Zhang,James J. Giovannoni,James J. Giovannoni,Jun Wang,Jun Wang,Yunfu Li,Zhangjun Fei,Zhangjun Fei,Yong Xu +72 more
TL;DR: A high-quality draft genome sequence of the east Asia watermelon cultivar 97103 containing 23,440 predicted protein-coding genes is reported, which yielded important insights into aspects of phloem-based vascular signaling in common between watermelon and cucumber and identified genes crucial to valuable fruit-quality traits.