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Alina Akhunova
Researcher at Kansas State University
Publications - 49
Citations - 4996
Alina Akhunova is an academic researcher from Kansas State University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 23, co-authored 43 publications receiving 4002 citations. Previous affiliations of Alina Akhunova include University of California & University of California, Davis.
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Journal ArticleDOI
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
Shichen Wang,Debbie Wong,Kerrie Forrest,Alexandra M. Allen,Shiaoman Chao,Bevan Emma Huang,Marco Maccaferri,Silvio Salvi,Sara Giulia Milner,Luigi Cattivelli,Anna M. Mastrangelo,Alex Whan,Stuart Stephen,Gary L A Barker,Ralf Wieseke,Joerg Plieske,Morten Lillemo,Diane E. Mather,Rudi Appels,Rudy Dolferus,Gina Brown-Guedira,Abraham B. Korol,Alina Akhunova,Catherine Feuillet,Catherine Feuillet,Jérôme Salse,Michele Morgante,Curtis J. Pozniak,Ming-Cheng Luo,Jan Dvorak,Matthew K. Morell,Jorge Dubcovsky,Jorge Dubcovsky,Martin W. Ganal,Roberto Tuberosa,Cindy Lawley,Ivan Mikoulitch,Colin Cavanagh,Keith J. Edwards,Matthew J. Hayden,Eduard Akhunov +40 more
TL;DR: The developed array and cluster identification algorithms provide an opportunity to infer detailed haplotype structure in polyploid wheat and will serve as an invaluable resource for diversity studies and investigating the genetic basis of trait variation in wheat.
Journal ArticleDOI
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars.
Colin Cavanagh,Shiaoman Chao,Shichen Wang,Bevan Emma Huang,Stuart Stephen,Seifollah Kiani,Kerrie Forrest,Cyrille Saintenac,Gina Brown-Guedira,Alina Akhunova,Deven R. See,Guihua Bai,Michael O. Pumphrey,Luxmi Tomar,Debbie Wong,Stephan Kong,Matthew P. Reynolds,Marta Lopez da Silva,Harold E. Bockelman,Luther E. Talbert,James A. Anderson,Susanne Dreisigacker,Stephen Baenziger,Arron H. Carter,Viktor Korzun,Peter L. Morrell,Jorge Dubcovsky,Jorge Dubcovsky,Matthew K. Morell,Mark E. Sorrells,Matthew J. Hayden,Eduard Akhunov +31 more
TL;DR: It is shown that selection likely acts on distinct targets or multiple functionally equivalent alleles in different portions of the geographic range of wheat, suggesting either weak selection pressure or temporal variation in the targets of directional selection during breeding probably associated with changing agricultural practices or environmental conditions.
Journal ArticleDOI
Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing
Isabelle M. Henry,Ugrappa Nagalakshmi,Meric Lieberman,Kathie J. Ngo,Ksenia V. Krasileva,Hans A. Vasquez-Gross,Alina Akhunova,Eduard Akhunov,Jorge Dubcovsky,Jorge Dubcovsky,Thomas H. Tai,Luca Comai +11 more
TL;DR: The authors combined high-throughput global sequencing targeted to genes and custom-designed bioinformatics tools to catalog and characterize chemically induced mutations in rice and wheat to provide a method for developing large-scale induced mutation resources with relatively small investments that is applicable to resource-poor organisms.
Journal ArticleDOI
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
Katherine W. Jordan,Shichen Wang,Yanni Lun,Laura-Jayne Gardiner,Ron MacLachlan,Pierre Hucl,Krysta Wiebe,Debbie Wong,Kerrie Forrest,Andrew G. Sharpe,Christine Sidebottom,Neil Hall,Christopher Toomajian,Timothy J. Close,Jorge Dubcovsky,Alina Akhunova,Luther E. Talbert,Urmil Bansal,Harbans Bariana,Matthew J. Hayden,Curtis J. Pozniak,Jeffrey A. Jeddeloh,Anthony Hall,Eduard Akhunov +23 more
TL;DR: The results suggest that duplicated homoeologous genes are under purifying selection, and it is hypothesized that allopolyploidy may have increased the likelihood of beneficial allele recovery by broadening the set of possible selection targets.
Journal ArticleDOI
Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae
Ming-Cheng Luo,Ken Deal,Eduard Akhunov,Eduard Akhunov,Alina Akhunova,Alina Akhunova,Olin D. Anderson,James A. Anderson,Nancy K. Blake,Michael T. Clegg,Devin Coleman-Derr,E. Conley,C. C. Crossman,Jorge Dubcovsky,Bikram S. Gill,Yong Q. Gu,J. Hadam,Hwa-Young Heo,Naxin Huo,Gerard R. Lazo,Yaqin Ma,David E. Matthews,Patrick E. McGuire,Peter L. Morrell,Calvin O. Qualset,J. Renfro,D. A. Tabanao,Luther E. Talbert,Chao Tian,D. M. Toleno,D. M. Toleno,Marilyn L. Warburton,Frank M. You,Wenjun Zhang,Jan Dvorak +34 more
TL;DR: Single-nucleotide polymorphism was used in the construction of an expressed sequence tag map of Aegilops tauschii, the diploid source of the wheat D genome, suggesting that the dependence of synteny erosion on gene location along the centromere–telomere axis either evolved recently in the Triticeae phylogenetic lineage or its evolution was recently accelerated.